CX675004

Overview
NameCX675004
Unique NameCX675004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675004_ssr104 microsatellite CX675004_ssr104:104..118. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675004_ssr417 microsatellite CX675004_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675004_ssr462 microsatellite CX675004_ssr462:462..481. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5466 contig Csv1_Contig5466:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675004 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.574e-13
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  140 IARDVFLWSRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGNIMRLLGKYDP*LVARDI 355
            I  D++LW RK L+F+ LLVST+ W+LL  Y F  +T+ SW+ +++VS  FL G+++RLL K +P L   ++
Sbjct:   15 IVEDIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEV 86          

HSP 2 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  528 PKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGII 740
            P+LSGLE+SE+  +E   S R ++EE  RWMF V  E EWFVFA+ V G  +LS +    D  T L+ G++
Sbjct:   79 PELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLV 149          
The following BLAST results are available for this feature:
BLAST of CX675004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RTNLM_ARATH2.574e-1344.44Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_59A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A09-A17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675004 ID=CX675004; Name=CX675004; organism=Citrus sinensis; type=EST; length=865bp
TAACTGTTCGGAGTTGAAGTCGTAGACATAACACTAAATTAATCGAATAA
CTAAAGAATAAAGAAGTGTTGATAGAATGGACGGTACAGCTGGTACAGAA
GGATCGTCGTCGTCGTCGTCTTGTTCTGATTCAGTAGGTATTGCAAGAGA
TGTATTCCTCTGGAGCAGAAAGAATCTGAGTTTCACACTTCTATTGGTTT
CAACAGCTATTTGGGTGCTGCTGGAGGTCTATCAATTTAACTTCCTCACT
GTGGCTTCGTGGCTTGCCATGTCCATTGTTTCTTTCACCTTTCTCTCTGG
AAACATTATGAGACTTCTTGGCAAGTACGATCCGTAGCTAGTAGCTCGTG
ATATACATAAGATATAAATTTTGATCACCCTTTTGATTAATTAGTCGTCT
TTTTTATATATTTCCTTTTATTTATTTAATTAGTCATCTTTTTATTATTT
ATATATTTCCTTTTATTTATTTATTTATTTAATTAGTTACTACATAATTG
GTCTTTCTATATTTATATAGAGAACCACCGAAGTTGTCGGGATTGGAGAT
TTCTGAGAAGTCAGCTTTGGAGGTTGCGAATTCCTTTAGAGGAGTGGTTG
AGGAATTTACAAGATGGATGTTTCATGTGAGTGTTGAGAAAGAGTGGTTT
GTTTTTGCTCAAGCAGTTGCTGGATTGCTAGTGCTCTCCTATGTGGCCAC
ATTTTCTGATCTTCTTACTCTCCTTTACACGGGTATTATTTAGTGCATCA
AAAGAAAGAAACTCTTATGTGCACATCTTTTCTCACAATCACATGCAACT
GTTAATGAACTATAAAATTGCGTTTCTTGCANGAATTGTGATGGGGATGA
CGGTTCCTGTGATAT
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