CV998063

Overview
NameCV998063
Unique NameCV998063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV998063_ssr67 microsatellite CV998063_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3559 contig Csv1_Contig3559:1..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998063 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 473.781 bits (1218), Expect = 6.956e-133
Identity = 216/244 (88.52%), Postives = 229/244 (93.85%), Query Frame = -2
Query:  271 IDDDCFVGKDPSEKPINALEQHIKNILSPSTPFFFNTLYDPFREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 1002
            IDDDCFV KDPS K INALEQHIKN+L PSTP FFNTLYDP+R+GADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVKP ERNTRYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHL LG+KTGLPYI+HSKASNPFVNLKKEY GIFWQE+IIPFFQA TLPKECTTVQ+CY+ELSKQVK+KLS +DPYF KL +AMVTWIEAWDELN
Sbjct:   99 IDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHERNTRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLGLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQAATLPKECTTVQQCYLELSKQVKKKLSSIDPYFTKLGEAMVTWIEAWDELN 342          
BLAST of CV998063 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 473.011 bits (1216), Expect = 1.187e-132
Identity = 217/245 (88.57%), Postives = 230/245 (93.88%), Query Frame = -2
Query:  268 IDDDCFVGKDPSEKPINALEQHIKNILSPSTPFFFNTLYDPFREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 1002
            IDDDCFV KDPS K INALEQHIKN+L PSTP FFNTLYDP+REGADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKPRERNTRYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL LGVKTGLPYI+HSKASNPFVNLKKEYKGI+WQE+IIPF Q+ TLPK+CT+VQ+CY+ELSKQVKEKLS +DPYF KLADAMVTWIEAWDELNP
Sbjct:  103 IDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFSQSATLPKDCTSVQQCYLELSKQVKEKLSTIDPYFTKLADAMVTWIEAWDELNP 347          
BLAST of CV998063 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 470.7 bits (1210), Expect = 5.889e-132
Identity = 218/245 (88.98%), Postives = 228/245 (93.06%), Query Frame = -2
Query:  268 IDDDCFVGKDPSEKPINALEQHIKNILSPSTPFFFNTLYDPFREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 1002
            IDDDCFV KDPS K INALEQHIKN+LSPSTPFFFNTLYDP+REGADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQLVKP+ERN RYVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL+LGVKTGLPYI+HSKASNPFVNLKKEYKGIFWQEDIIPFFQ VT+PK+C TVQ+CYI LS QVKEKL  +DPYF KL DAMVTWIEAWDELNP
Sbjct:  109 IDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKPKERNERYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQNVTIPKDCDTVQKCYIYLSGQVKEKLGTIDPYFVKLGDAMVTWIEAWDELNP 353          
BLAST of CV998063 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 466.463 bits (1199), Expect = 1.111e-130
Identity = 214/244 (87.70%), Postives = 228/244 (93.44%), Query Frame = -2
Query:  271 IDDDCFVGKDPSEKPINALEQHIKNILSPSTPFFFNTLYDPFREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 1002
            IDDDCFV KDP+   INALEQHIKN+LSPSTPFFFNTLYDP+REG DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP ERNTR+VD VLTIPKG+LFPMCGMNLAF+R LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICDHL  GVKTGLPYI+HSKASNPFVNLKKEYKGIFWQE+IIPFFQA TL K+CT+VQ+CYIELSKQVKEKL  +DPYF KLADAMVTW+EAWDE+N
Sbjct:  102 IDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGYGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFIKLADAMVTWVEAWDEIN 345          
The following BLAST results are available for this feature:
BLAST of CV998063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG1_SOLTU6.956e-13388.52Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG2_SOLTU1.187e-13288.57Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG_MAIZE5.889e-13288.98Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_PEA1.111e-13087.70Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_B-3_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC57_A08_064, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998063 ID=CV998063; Name=CV998063; organism=Citrus sinensis; type=EST; length=1003bp
ATCTCCTGGAAATTGAAAGCAAAATCAACCACATATGTTTTATTCCTATA
AGTTCAGAGCATGAAGTAAATAAATAAAATTACACTGACCAATCTGTAAA
ATCCAAATGTCGGACCAAATTGGGTGCCAAAAAGTGCATAAAAATTTGTA
AAAATACAGCAGCTAATGACTATAAATTACTCCCTAATATGAAGGAAAAT
ATTGTCGTCCGCAGTTAATCAAAAGTTTCTCTACTTAGGCTTTGCCATTG
GCCACTGCAGCTCCAGCTGGGTTAAGCTCATCCCACGCTTCAATCCAGGT
CACCATGGCATCTGCCAACTTGTCGAAGTAGGGATCTACTTTGCTAAGCT
TTTCCTTGACCTGTTTCGACAGTTCAATGTAGCACTCTTGCACAGTAGTG
CACTCTTTTGGAAGTGTCACGGCTTGGAAGAATGGGATGATATCTTCCTG
CCAGAAGATGCCCTTGTACTCTTTCTTTAGGTTCACAAACGGGTTGCTTG
CTTTGCTGTGGAAGATATAAGGCAGACCAGTCTTTACTCCCAAATTCAAA
TGGTCACATATCACCTTGGTGCACCAGCCAGCCCACATATCATCATAACG
TCCAATTGGCTGACCGTCGCCCATGAGGCCAAAATACATTGCAGGGCCAA
TCAAGTGACGGTCGAATGCCAAATTCATACCACACATGGGGAAGAGAGTG
CCCTTAGGAATGGTCAAAACCATATCCACATACCTAGTGTTCCTCTCCCG
TGGCTTCACAAGCTGTGTAGGTGCATCATAGTCCGGAATGTTGAGCCAGA
GGCCATGAGAAACAGCAGTTGGGACACCCTCGCGGAGACTGAAAGGGTAT
CCACGGACAAAATCTGCACCTTCTCTGAAGGGATCATACAGAGTGTTGAA
GAAAAAGGGAGTTGAAGGGGAGAGAATGTTCTTGATGTGCTGCTCGAGCG
CATTGATTGGTTTTTCAGATGGATCCTTACCAACAAAGCAATCATCATCA
ATG
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