EL492437

Overview
NameEL492437
Unique NameEL492437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:599..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 5.168e-63
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQK+RQVLVEHALNNGE+EK  ++SIFQKI AFEEELK VLPKEVE+AR  VE+G+P+IPNRIKECRSYPLY+ VREELG+  LTGEKV SPGE+FDKVFTAMC+GKIIDP+L+CL  WNGAPLPIC
Sbjct:  278 YIDDPCSATYPLMQKVRQVLVEHALNNGESEKNGSTSIFQKIGAFEEELKAVLPKEVESARDGVESGNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGAPLPIC 416          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.273e-61
Identity = 109/139 (78.42%), Postives = 125/139 (89.93%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLRQVLVEHAL NGE E  + +SIFQKI +FEEELKT+LPKEVE+AR  VENG+P +PNRIKECRSYPLY+ VREELG++ LTGEKV SPGE+FDKVFTA+C GK++DP+LECL+EWNGAPLPIC
Sbjct:  544 YIDDPCSATYPLMQKLRQVLVEHALVNGERETNSTTSIFQKIRSFEEELKTLLPKEVESARLEVENGNPVVPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGAPLPIC 682          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.663e-61
Identity = 110/139 (79.14%), Postives = 125/139 (89.93%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLRQVLVEHAL NGE  + + +SIFQKI +FEEELKT+LPKEVE+AR  VENG+P IPNRIKECRSYPLY+ VREELG++ LTGEKV SPGEEFDKVFTA+C GK+IDP+LECL+EW+GAPLPIC
Sbjct:  572 YIDDPCSATYPLMQKLRQVLVEHALVNGEKVRNSTTSIFQKIGSFEEELKTLLPKEVESARLEVENGNPAIPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGAPLPIC 710          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.171e-61
Identity = 107/139 (76.98%), Postives = 125/139 (89.93%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLRQVLVEHAL NGE+EK  ++SIFQKI AFEEE+KT+LPKEVE+ R  +ENG+  IPNRIKECRSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTA+C+G++IDP+++CL+EWNGAPLPIC
Sbjct:  576 YIDDPCSATYPLMQKLRQVLVEHALKNGESEKNLSTSIFQKIRAFEEEIKTLLPKEVESTRAAIENGNSAIPNRIKECRSYPLYKFVREELGTELLTGEKVRSPGEEFDKVFTALCKGEMIDPLMDCLKEWNGAPLPIC 714          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 8.251e-61
Identity = 110/139 (79.14%), Postives = 119/139 (85.61%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLRQVLVEHAL N ENEK  N+SIFQKI  FEEELKT+LPKEVE AR   ENG   IPN+IKECRSYPLY+ VREELG+  LTGEKV SPGEE DK+FTAMCQGKIIDP+LEC+ EWNGAPLP+C
Sbjct:  577 YIDDPCSATYPLMQKLRQVLVEHALANAENEKNVNTSIFQKITTFEEELKTLLPKEVEGARIAYENGQSAIPNKIKECRSYPLYKFVREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGAPLPLC 715          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 1.407e-60
Identity = 107/139 (76.98%), Postives = 122/139 (87.77%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y+ DPCSATYPLMQ+LRQV+V+HAL+NGE EK A +SIFQKI AFEEELK VLPKEVE AR    NG+  IPNRIKECRSYPLYR VREELG+  LTGEKV SPGEEFDKVFTAMC+GK+IDP+++CL+EWNGAP+PIC
Sbjct:  579 YVDDPCSATYPLMQRLRQVIVDHALSNGETEKNAVTSIFQKIGAFEEELKAVLPKEVEAARAAYGNGTAPIPNRIKECRSYPLYRFVREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGAPIPIC 717          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 1.838e-60
Identity = 108/139 (77.70%), Postives = 120/139 (86.33%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCS  YPLMQKLRQVLV+HA+NNGE+EK  NSSIFQKI AFE+ELK VLPKEVE+AR  +E+G+P IPNRI ECRSYPLYR VR+ELG+  LTGEKV SPGEE DKVFTAMC G+IIDPMLECL+ WNGAPLPIC
Sbjct:  577 YADDPCSCNYPLMQKLRQVLVDHAMNNGESEKNVNSSIFQKIGAFEDELKAVLPKEVESARAALESGNPAIPNRITECRSYPLYRFVRKELGTELLTGEKVRSPGEECDKVFTAMCNGQIIDPMLECLKSWNGAPLPIC 715          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 1.838e-60
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCSATYPL+QKLRQV+V+HAL NGE+EK A +SIF KI AFEEELK VLPKEVE AR   +NG+  IPNRIKECRSYPLYR VREELG+  LTGEKVTSPGEEFDKVFTA+C+GKIIDPM+ECL EWNGAP+PIC
Sbjct:  587 YADDPCSATYPLIQKLRQVIVDHALINGESEKNAVTSIFHKIGAFEEELKAVLPKEVEAARAAYDNGTSAIPNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGAPIPIC 725          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.135e-60
Identity = 109/138 (78.99%), Postives = 123/138 (89.13%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 424
            YI DPCSATYPLMQKLRQVLVEHAL NGE EK  ++SIFQKIAAFE+ELK +LPKEVE+AR  VE+G+P IPNRIKECRSYPLY+ +REELG+ +LTGEKVTSPGEEFDKVFTAM +G+IIDP+L CL  WNGAPLPI
Sbjct:  570 YIDDPCSATYPLMQKLRQVLVEHALKNGETEKNLSTSIFQKIAAFEDELKALLPKEVESARAVVESGNPAIPNRIKECRSYPLYKFIREELGTVYLTGEKVTSPGEEFDKVFTAMSKGEIIDPLLACLESWNGAPLPI 707          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 4.095e-60
Identity = 109/139 (78.42%), Postives = 123/139 (88.49%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCS TYPLMQKLRQVLVEHAL NGE EK +++SIFQKI AFEEELKT LPKEVE+AR  +E G+  IPNRIKECRSYPLY+ VREEL ++ LTGEKV SPGEEFDKVF+A+CQGK+IDP+LECLREWNGAP+PIC
Sbjct:  482 YIDDPCSCTYPLMQKLRQVLVEHALINGEKEKDSSTSIFQKIGAFEEELKTHLPKEVESARIELERGNSAIPNRIKECRSYPLYKFVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGAPIPIC 620          
The following BLAST results are available for this feature:
BLAST of EL492437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PALY_VITVI5.168e-6380.58Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PAL1_POPKI1.273e-6178.42Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PAL2_POPKI1.663e-6179.14Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PALY_CAMSI2.171e-6176.98Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PALY_STYHU8.251e-6179.14Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL2_ARATH1.407e-6076.98Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL1_TOBAC1.838e-6077.70Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL1_ARATH1.838e-6078.42Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PAL1_DAUCA3.135e-6078.99Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PALY_PERAE4.095e-6078.42Phenylalanine ammonia-lyase OS=Persea americana GN... [more]

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Properties
Property NameValue
Genbank descriptionC0350 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0350, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492437 ID=EL492437; Name=EL492437; organism=Citrus sinensis; type=EST; length=428bp
ACGTCTTTGCTACATTGTTGACCCCTGCAGTGCTACCTATCCATTGATGC
AAAAGCTAAGGCAAGTACTTGTTGAGCACGCACTGAACAATGGAGAGAAC
GAGAAGACTGCCAACTCTTCAATCTTCCAGAAGATTGCAGCCTTTGAGGA
GGAATTGAAAACCGTTTTGCCCAAAGAAGTTGAGAACGCCAGGCAGACTG
TTGAGAATGGAAGTCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCT
TACCCTTTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAAC
AGGGGAAAAAGTTACATCGCCCGGCGAGGAATTTGACAAAGTGTTTACAG
CAATGTGCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAA
TGGAATGGCGCCCCTCTTCCAATTTGTT
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