EL492425

Overview
NameEL492425
Unique NameEL492425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:272..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.462e-39
Identity = 80/100 (80.00%), Postives = 81/100 (81.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKEI NGILWEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK FVTYMKRFIKLLTPKL EE+QE F
Sbjct:   11 DELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.705e-36
Identity = 75/100 (75.00%), Postives = 80/100 (80.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSF YKEIENG+LWEVEGKWVV+GAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK FVT+MKRFIK LTPKL  E+QE+F
Sbjct:   11 DELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.705e-36
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKEI NG+LWEVEGKWV+QGAV+VDIGANPS               KVVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E+QE+F
Sbjct:   11 DELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.327e-35
Identity = 72/100 (72.00%), Postives = 79/100 (79.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKE+ENG+LWEV+GKWVVQGAVDV+IGANPS               +VVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E QE F
Sbjct:   11 DELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.327e-35
Identity = 71/100 (71.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKE+ENG++WEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQP  DKK F+ Y+K+FIKLLTPKL  E+QE F
Sbjct:   11 DELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.346e-35
Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDV+IGANPS               KVVDIVDTFRLQEQPAFDKK FVTY+KR+IK LTPKL  E QE F
Sbjct:   11 DELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.264e-34
Identity = 71/100 (71.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKEIENGILWEVEGKWV  GAVDV+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKLSEE Q +F
Sbjct:   11 DELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.817e-34
Identity = 73/102 (71.57%), Postives = 80/102 (78.43%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPS--XXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKEI+NG+LWEV+GKWVVQGAVDVDIGANPS                 KVVDIVDTFRLQEQP FDKK FVT++KR+IKLLTPKL  E+QE F
Sbjct:   11 DELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETF 112          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.679e-34
Identity = 71/100 (71.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPY+EIENGILWEV+GKWVVQGA+DVDIGANPS               KVVDIVDTFRLQEQP FDKK FVT+MKR+IK L+ KL  E+QE F
Sbjct:   11 DELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.938e-33
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKEIENGILWEVEGKW  +G V+V+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKL+ E+QE F
Sbjct:   11 DELLSDSFPYKEIENGILWEVEGKWTTKGCVEVNIGANPSAEEGGEDEGVDDSVEKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEF 110          
The following BLAST results are available for this feature:
BLAST of EL492425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_HEVBR8.462e-3980.00Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN6.705e-3675.00Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV6.705e-3673.00Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC3.327e-3572.00Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA3.327e-3571.00Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU4.346e-3573.00Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH1.264e-3471.00Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN2.817e-3471.57Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ3.679e-3471.00Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL6.938e-3367.00Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC0200 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0200, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492425 ID=EL492425; Name=EL492425; organism=Citrus sinensis; type=EST; length=309bp
CCGTGATGAGCTTCTCTCCGATTCTTTTCCCTACAAGGAAATTGAGAATG
GGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGTTGAT
GTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGG
TGTTGATGACCAAGCCGTGAAGGTGGTNGACATTGTCGACACATTCAGGC
TACAGGAGCAACCCGCTTTTGACAAGAAGCCGTTTGTAACATACATGAAG
AGATTCATCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGAT
ATTTACTAG
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