CV884663

Overview
NameCV884663
Unique NameCV884663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:300..1135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884663 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.287e-19
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = -3
Query:  595 EDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 816
            +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   75 DDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148          
The following BLAST results are available for this feature:
BLAST of CV884663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.287e-1954.05Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884663 ID=CV884663; Name=CV884663; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTGCAACGACAACTTCATTCCATTACACAAGTCAAAT
TAATTAGAACCCAAACATGATTAATAATATATACACAATTGCGGATTGCC
CACATAACAAGAAAAACACTCTATCAAAGAAAAAGGTCAAAAGAACCTCG
AAGAGTGAGTAACAACTTTATTTTTAACTTAATAGAAGGAAAAATGAAAG
GTAGTAGTTTCAGCTTTTGAGTTGGAAGTAGGCAAATTCACAGCAAGATC
AATCAAATTGATCCTTAATTGATAAATTAATGTGAGTCCCATTGATTAGT
CCAGTCTGCTTCACTTCCCACACGTGGAATGCTGTTGATCCTAGTGTATT
TATCAACCTTGAAATTGGCTCCACACATGACACCTTCACTATCTACTCTT
GGCATTGCCCTTATCTTGTTCATTGGATGCTCAAAGCTCATCAATCCTCC
TTCACTGTGGAACATGCACCCCTGTGGGAAGGGAGCAAATGACTTGGCAC
ATCCCTCTTTGATGACCTCCAAGTCATCAGATATGACCACAGATCCATCG
GCTGCAATTCCCCAGTACAGCTTCACTCCCCCATCAGAACCCAGAGCAGT
GAAGACCGTGCCGGCCTTGCTATCGTAGACCACAAAAGCAAAGCTCCCAT
CAAGATCCTTGACAACCTGGTCAGCTGGGTAAGGACCCCGGTCTCTGAGC
GTACGATACGCCTCTATCACAAACATGGCCTCATCGGTTCCCTTTGACAA
CCCATATTGCCTGATCAGCGAACACAAGTTGTTCAAGGACCCCATGAACA
GACAGTATATGTCCTCAAACCCGCAAAACAACCTTC
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