CV884660

Overview
NameCV884660
Unique NameCV884660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11317 contig Csv1_Contig11317:513..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884660 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.483e-40
Identity = 86/256 (33.59%), Postives = 145/256 (56.64%), Query Frame = 2
Query:    8 QLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVK---EKCGTSALTFESVKSLELVQSVVYETLRLNPPVPLQFARARKDFQLSSYDSVYDIKKGELLCG 766
            +LK    + +K      + E  SS   L + VE +L+ K   ++  P ++  FNFLS++  G  P  D  + ++  S++ KW+   + P +S+ + + +EE  LHS   P  LV  DY++L+ F       V+   +   G++++EA HN+LF + FN++GGF I  P L+  I      L  KL  E++   +  G   +T  +++ + L++SVVYETLR+ PPV LQ+ +A+KDF L S+++ Y +K+GE+L G
Sbjct:  184 KLKQLLFNLIKNRRDYVIPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAAFNFLSRAFFGVKP-IDTPLGKDAPSLISKWVLFNLAPILSVGLPKEVEEATLHSVRLPPLLVQNDYHRLYEFFTSAAGSVLDEAEQS-GISRDEACHNILFAVCFNSWGGFKILFPSLMKWIGRAGLELHTKLAQEIRSAIQSTGGGKVTMAAMEQMPLMKSVVYETLRIEPPVALQYGKAKKDFILESHEAAYQVKEGEMLFG 437          
BLAST of CV884660 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.463e-38
Identity = 87/255 (34.12%), Postives = 140/255 (54.90%), Query Frame = 2
Query:    8 QLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVKE--KCGTSALTFESVKSLELVQSVVYETLRLNPPVPLQFARARKDFQLSSYDSVYDIKKGELLCG 766
            +LK      LK S      E  ++   LFD++EKELS K    +        FNFL+++  G +P AD ++  +   ++ KW+   + P +SI + + +EE  +H+F+ P ALV  DY +L+ F  +   E++    D+ G+++EEA HNLLF   FN +GG  I  P ++  I      +  +L  E++   K     LT  +++ +EL +SVVYE LR  PPV  Q+ RA+KD  + S+D+ + +K GE+L G
Sbjct:  166 KLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNP-ADTKLKADAPGLITKWVLFNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVEA-DKLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYG 418          
BLAST of CV884660 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 76/256 (29.69%), Postives = 146/256 (57.03%), Query Frame = 2
Query:    8 QLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVK---EKCGTSALTFESVKSLELVQSVVYETLRLNPPVPLQFARARKDFQLSSYDSVYDIKKGELLCG 766
            QLK      LK SS   + +  ++   LF+ +E EL++    ++    ++  F FL ++   ++P+ + ++  +  +++  W+   + PT+ + +   L+E  LH+F  P  L+   YNKL+++ +     V+++ + + G+ K+EA+HN+LF + FN FGG  I  P  +  I      L  +L  E++   +  G   +T E+++ + L +SVVYE+LR+ PPVP Q+ +A+ +F + S+D+ +++KKGE+L G
Sbjct:  121 QLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPE-ETKLGTSAPTLISSWVLFNLAPTLDLGLPWFLQEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQAE-KLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESHDATFEVKKGEMLFG 374          
BLAST of CV884660 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.406e-35
Identity = 77/228 (33.77%), Postives = 130/228 (57.02%), Query Frame = 2
Query:   89 LFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVKEKCGTSA--LTFESVKSLELVQSVVYETLRLNPPVPLQFARARKDFQLSSYDSVYDIKKGELLCG 766
            LF  +E +L+      + V      F FL + ++G DP A + +  +G  ++ KW+  Q+ P +S+ +   +E+  LHS   P ALV  DY++L +F     K VV  G+   G+ +EEA+HN+LF L FN+FGG  I  P L+  +      +  +L +EV+     +   +T +++  + LV+S VYE LR+ PPV +Q+ RA++D  + S+D  Y++++GE+L G
Sbjct:  187 LFGLMENDLARVGKADFGVHNDAAAFGFLCQGLLGRDP-AKSALGRDGPKLITKWVLFQLSPLLSLGLPTLVEDTLLHSLRLPPALVKKDYDRLADFFRDAAKAVVDEGE-RLGIAREEAVHNILFALCFNSFGGMKILFPTLVKWLGRAGARVHGRLATEVRGAVRDNGGEVTMKALAEMPLVKSAVYEALRIEPPVAMQYGRAKRDMVVESHDYGYEVREGEMLFG 412          
BLAST of CV884660 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 77/256 (30.08%), Postives = 135/256 (52.73%), Query Frame = 2
Query:    8 QLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCV-FNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVKEKCGTSA--LTFESVKSLELVQSVVYETLRLNPPVPLQFARARKDFQLSSYDSVYDIKKGELLCG 766
            ++K   +  L      +V    S+   L DTVE +L+     S    L     F F+ ++  G  P A + +   G +    WL  Q+ P  ++ +   +E+  LH+   P  L+S DY  L+ +      + +   +   GL++EEA HNLLF   FN++GGF + +P++++ +A     L  +L +E++     +   +T  +++ +EL +SVV+E LRL+PPV  Q+ RA+ D ++ S+D+ + IKKGE+L G
Sbjct:  121 KIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVRPSASSSLGTGGPTKAALWLLWQLAPLTTLGLPMIIEDPLLHTLPLPPFLISSDYKALYAYFAAAASQALDAAEG-LGLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERLAAEIRSAVADAGGNVTLAALEKMELTRSVVWEALRLDPPVRFQYGRAKADLEIESHDASFAIKKGEMLFG 375          
BLAST of CV884660 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.467e-30
Identity = 77/231 (33.33%), Postives = 128/231 (55.41%), Query Frame = 2
Query:   89 LFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQ-PLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEF-GLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVKEKC--GTSALTFESV-KSLELVQSVVYETLRLNPPVPLQFARARKDFQLSSYDSVYDIKKGELLCG 766
            +FD V+  L     + +     + + +F   ++ G  P + A + +   +   KWL  Q+ P  S  +   PLE++ LH+F  P  LV  +Y ++  +       ++   +    G+ ++E +HNL+F+  FNA+GGF IF+P ++  +A     L AKL SEV+     G   +T  +V K + LV+SVV+E LR+NPPV  Q+ RAR+D  + S+D+ Y+++KGELL G
Sbjct:  169 MFDEVDAGLVAGGPVEFNKLNMRYMLDFTCAALFGGAPPSKA-MGDAAVTKAVKWLIFQLHPLASKVVKPWPLEDLLLHTFRLPPFLVRREYGEITAYFAAAAAAILDDAEKNHPGIPRDELLHNLVFVAVFNAYGGFKIFLPHIVKWLARAGPELHAKLASEVRAAAPAGGGEITISAVEKEMPLVKSVVWEALRMNPPVEFQYGRARRDMVVESHDAAYEVRKGELLFG 398          
BLAST of CV884660 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 76/231 (32.90%), Postives = 126/231 (54.55%), Query Frame = 2
Query:   89 LFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQ-PLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEF-GLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVKEKCGTS---ALTFESVKSLELVQSVVYETLRLNPPVPLQFARARKDFQLSSYDSVYDIKKGELLCG 766
            +FD VE  L    ++ +     + + +F   ++ G +P +   + +   +    WLA Q+ P  S  +   PLEE+ LH+F+ P  LV   Y  L  +       V+   +    G+ ++E + NL+F+  FNAFGGF IF+P ++  +A     L AKL +EV+    T     +T  +V+ + LV+SVV+E LR+NPPV  Q+  AR+D  + S+D+ Y+++KGE+L G
Sbjct:  169 MFDAVEAGLGA--AVEFNKLNMRYMLDFTCAALFGGEPPSKV-VGDGAVTKAMAWLAFQLHPIASKVVKPWPLEELLLHTFSLPPFLVRRGYADLKAYFADAAAAVLDDAEKSHTGIPRDELLDNLVFVAIFNAFGGFKIFLPHIVKWLARAGPELHAKLATEVRATVPTGEDDGITLAAVERMPLVKSVVWEALRMNPPVEFQYGHARRDMVVESHDAAYEVRKGEMLFG 396          
The following BLAST results are available for this feature:
BLAST of CV884660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74_LINUS3.483e-4033.59Allene oxide synthase, chloroplastic OS=Linum usit... [more]
CP74A_ARATH1.463e-3834.12Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
C74A2_PARAR1.789e-3629.69Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A1_ORYSJ4.406e-3533.77Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
C74A2_ORYSJ5.385e-3330.08Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A4_ORYSJ1.467e-3033.33Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
C74A3_ORYSJ2.766e-2932.90Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884660 ID=CV884660; Name=CV884660; organism=Citrus sinensis; type=EST; length=767bp
GACGGTCCAGCTCAAAGGCTTCGCCATGGACACTCTGAAAAGAAGCTCAA
AATTATGGGTATCAGAAGTGGTATCAAGTCTGGACACACTGTTCGACACC
GTCGAGAAAGAGCTCTCCGAAAAGAACAGCATAAGCTACATGGTCCCTTT
ACAAAAATGCGTCTTTAACTTCCTCTCAAAATCGATCGTGGGAGCCGACC
CAAAAGCCGACGCCGAAATCGCCGAGAACGGCTTCTCCATGCTCGACAAG
TGGCTGGCCTTGCAGATCCTGCCCACAGTCAGCATAAACATCTTGCAGCC
CCTTGAAGAGATCTTTCTTCACTCTTTTGCTTACCCTTTTGCCCTTGTCA
GTGGAGACTACAACAAGCTCCACAACTTCGTTGAAAAGGAAGGCAAAGAA
GTTGTGCAGCGGGGGCAGGACGAGTTTGGGCTAACAAAAGAAGAGGCCAT
TCACAACTTGCTGTTCATTCTAGGGTTTAATGCTTTCGGTGGGTTCTCTA
TTTTTGTGCCAAAGCTGATTAATGCAATTGCTAGTGACACAACTGGGTTG
CAGGCAAAGTTAAGAAGTGAAGTGAAAGAGAAATGTGGGACATCCGCCTT
GACTTTTGAGTCAGTCAAGAGTCTAGAGTTGGTTCAGTCTGTGGTTTACG
AAACTCTGAGACTTAACCCACCGGTTCCTCTCCAGTTTGCAAGGGCAAGG
AAGGACTTCCAACTGAGCTCGTACGACTCGGTGTACGATATCAAGAAAGG
TGAGTTGCTTTGCGGGT
back to top