CV884643

Overview
NameCV884643
Unique NameCV884643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12892 contig Csv1_Contig12892:30..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884643 vs. ExPASy Swiss-Prot
Match: TRIP4_MOUSE (Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.279e-15
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 2
Query:   98 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYP 313
            CL+MHQPWASLLV GIKRVEGRSW  P RGRLWI A  K P    +  ++  YR +       D++FP  YP
Sbjct:  436 CLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATGKRPSPQEVSELQATYRLLRG----KDVEFPNDYP 503          
BLAST of CV884643 vs. ExPASy Swiss-Prot
Match: TRIP4_HUMAN (Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 5.078e-15
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   98 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYP 313
            CL++HQPWASLLV GIKRVEGRSW  P RGRLWI A +K P    +  ++  YR +       D++FP  YP
Sbjct:  436 CLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRG----KDVEFPNDYP 503          
The following BLAST results are available for this feature:
BLAST of CV884643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRIP4_MOUSE2.279e-1554.17Activating signal cointegrator 1 OS=Mus musculus G... [more]
TRIP4_HUMAN5.078e-1552.78Activating signal cointegrator 1 OS=Homo sapiens G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884643 ID=CV884643; Name=CV884643; organism=Citrus sinensis; type=EST; length=403bp
GTAAAGTAGTGTGAAATTTTCCGATTGATTCTCCCGGGAACCAAACACAG
AGAAAGAGATGAGAGGAGTAAGAAAGCAAGGGAACTACACGAACCCGTGT
TTGACGATGCATCAACCATGGGCTTCACTCCTCGTTTACGGGATCAAGCG
CGTTGAAGGCAGGTCTTGGCCTGCTCCTCTTCGAGGCCGTCTATGGATTC
ATGCTGCTAGCAAGATTCCCGAAGAAGCTACCATCAAAGCAATGGAAGAA
TTTTACAGGGAAATTTATGCAGTCAATGGGATCACTGATCTTCAGTTTCC
CCAACATTATCCAGTTTCAAGACTTTTAGGGTGTGTTGAAGTAGTCGGCT
GCGTTCGCTGCGAAGAACTAGGAAGCTGGGAAGTGGTACCTGAAGGGGTG
AGG
back to top