CV884642

Overview
NameCV884642
Unique NameCV884642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.964e-34
Identity = 91/238 (38.24%), Postives = 127/238 (53.36%), Query Frame = -1
Query:  218 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQEN----EETSHAVEAEAPVSEQSKN--------------HVSSENANAQLXXXXXXXXXXXXXXXXXXXXSMNWVQFSDSRTILSNVYQQ----------------------PQLVKVEEQSLLFNPEDPCNIFSVDQAPTLQWY 811
            V QVKALEKNFE+DNKLEP+RKVKLA+ELGLQPRQ+A+WFQNRRAR K+K+LERDYG+LK+N+DAL+ + ++LQ++N++L  +++ELKAKL  E     EE       EA  S  + N              H+ ++   ++L                           SDS  +L+  Y                         Q VK+EE   LF+ E+ C +F+ ++    QWY
Sbjct:   78 VEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLNVEGVKGIEENGALKAVEANQSVMANNEVLELSHRSPSPPPHIPTDAPTSELAFEMFSIFPRTENFRDDP------ADSSDSSAVLNEEYSPNTVEAAGAVAATTVEMSTMGCFSQFVKMEEHEDLFSGEEACKLFADNE----QWY 305          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.895e-33
Identity = 89/246 (36.18%), Postives = 128/246 (52.03%), Query Frame = -1
Query:  212 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC-----QENEETSHAVEAEAPVSEQSKNHVSSENANAQLXXXXXXXXXXXXXXXXXXXXSMNWVQFSDSRTIL------------------------------SNV-------------YQQPQLVKVEEQSLLFNPEDPCNIFSVDQAPTLQWYFT 805
            QVKALEKNFE++NKLEP+RKVKLA+ELGLQPRQ+AVWFQNRRAR K+K+LE+DYG+LK  YD+LR ++++L+++NE+L  E+ +LK KL      +E EE + AV  E+ +S + +     E                           +N+  F+D R +L                              SNV             +Q  ++ + E+     + E+ C  FS +Q P+L WY T
Sbjct:   70 QVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGGGGEEEEEENNAAVTTESDISVKEEEVSLPEKIT---------EAPSSPPQFLEHSDGLNYRSFTDLRDLLPLKAAASSFAAAAGSSDSSDSSALLNEESSSNVTVAAPVTVPGGNFFQFVKMEQTEDHEDFLSGEEACEFFSDEQPPSLHWYST 306          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.206e-31
Identity = 81/223 (36.32%), Postives = 119/223 (53.36%), Query Frame = -1
Query:  218 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENANAQLXXXXXXXXXXXXXXXXXXXXSMNWV------QFSDSRTILSNVYQQP----------------QLVK---VEEQSLLFNPEDPCNIFSVDQAPTLQWY 811
            V QVKALEKNFE++NKLEP+RK KLA+ELGLQPRQ+AVWFQNRRAR K+K+LE+DYG+LK  YD+LR ++++L+++N++L  E+ ++KAK+  E +  ++    E    E+     S  ++  Q                       + V         DS  +L++                     Q VK    E+     + E+ C  FS +Q P+L WY
Sbjct:   65 VDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNNKAITEGVKEEEVHKTDSIPSSPLQFLEHSSGFNYRRSFTDLRDLLPNSTVVEAGSSDSCDSSAVLNDETSSDNGRLTPPVTVTGGSFLQFVKTEQTEDHEDFLSGEEACGFFSDEQPPSLHWY 287          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.605e-30
Identity = 64/109 (58.72%), Postives = 86/109 (78.90%), Query Frame = -1
Query:  485 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVS 811
            V QV+ALE++FEV+NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERDY  L+ +YD+LRLD++ L+++ +AL AE++ELKAKL  E    S     E P +
Sbjct:   57 VEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVKEEPAA 165          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.605e-30
Identity = 64/109 (58.72%), Postives = 86/109 (78.90%), Query Frame = -1
Query:  485 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVS 811
            V QV+ALE++FEV+NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERDY  L+ +YD+LRLD++ L+++ +AL AE++ELKAKL  E    S     E P +
Sbjct:   57 VEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVKEEPAA 165          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.318e-29
Identity = 82/213 (38.50%), Postives = 120/213 (56.34%), Query Frame = -1
Query:  218 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQEN----------EETSHAVEAEAPVSEQSKNHVSSENANAQLXXXXXXXXXXXXXXXXXXXXSMNWVQFSDSRTIL--SNVYQQPQLVKVEEQSLLFNPED--PCNIFSVDQ-APTLQWY 811
            V QV+ALE++FE +NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERDY  L+ +YDALR D++ L+++ +AL AE++ELK KL  E+          EE   A +A+ P +   +   S  +++A L                    S           +L  + V+   QL+KV++    F  +D   C  F  D+  P+L W+
Sbjct:   49 VEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSVKEEEDPAASDADPPATGAPQGS-SESDSSAVLNDAEILPHKPAPAAAADAAASEETEAVVTGAALLHHAEVFFHGQLLKVDDDEAAFLGDDGAACGGFFADEHLPSLPWW 260          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.318e-29
Identity = 82/213 (38.50%), Postives = 120/213 (56.34%), Query Frame = -1
Query:  218 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQEN----------EETSHAVEAEAPVSEQSKNHVSSENANAQLXXXXXXXXXXXXXXXXXXXXSMNWVQFSDSRTIL--SNVYQQPQLVKVEEQSLLFNPED--PCNIFSVDQ-APTLQWY 811
            V QV+ALE++FE +NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERDY  L+ +YDALR D++ L+++ +AL AE++ELK KL  E+          EE   A +A+ P +   +   S  +++A L                    S           +L  + V+   QL+KV++    F  +D   C  F  D+  P+L W+
Sbjct:   49 VEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSVKEEEDPAASDADPPATGAPQGS-SESDSSAVLNDAEILPHKPAPAAAADAAASEETEAVVTGAALLHHAEVFFHGQLLKVDDDEAAFLGDDGAACGGFFADEHLPSLPWW 260          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSJ (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. japonica GN=HOX13 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.809e-29
Identity = 59/104 (56.73%), Postives = 85/104 (81.73%), Query Frame = -1
Query:  494 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEA 805
            QV+ALE++F+ DNKL+PDRK ++A +LGLQPRQ+AVWFQNRRAR K+K+LERD+  L+A +DALR D + L+++ +AL AE+REL+ KL  +  +T+ +V+ EA
Sbjct:   80 QVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRELREKLPTKPADTAASVKVEA 183          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSI (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. indica GN=HOX13 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.170e-27
Identity = 59/105 (56.19%), Postives = 85/105 (80.95%), Query Frame = -1
Query:  494 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANY-DALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEA 805
            QV+ALE++F+ DNKL+PDRK ++A +LGLQPRQ+AVWFQNRRAR K+K+LERD+  L+A + DALR D + L+++ +AL AE+REL+ KL  +  +T+ +V+ EA
Sbjct:   80 QVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRAQHNDALRADCDALRRDKDALAAEIRELREKLPTKPADTAASVKVEA 184          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.116e-26
Identity = 58/109 (53.21%), Postives = 80/109 (73.39%), Query Frame = -1
Query:  479 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQ 805
            QV  LEK+FE +NKLEP+RK +LA++LGLQPRQ+AVWFQNRRAR K+K+LERDY LLK+ YD L  +Y+++  +N+ L +E+  L  KL Q  +ET++    + P   Q
Sbjct:   76 QVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKL-QGKQETANEPPGQVPEPNQ 183          
The following BLAST results are available for this feature:
BLAST of CV884642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
ATHB5_ARATH6.964e-3438.24Homeobox-leucine zipper protein ATHB-5 OS=Arabidop... [more]
ATHB6_ARATH5.895e-3336.18Homeobox-leucine zipper protein ATHB-6 OS=Arabidop... [more]
ATB16_ARATH7.206e-3136.32Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
HOX4_ORYSJ1.605e-3058.72Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI1.605e-3058.72Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX20_ORYSJ2.318e-2938.50Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI2.318e-2938.50Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX13_ORYSJ8.809e-2956.73Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
HOX13_ORYSI2.170e-2756.19Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
HAT5_ARATH9.116e-2653.21Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884642 ID=CV884642; Name=CV884642; organism=Citrus sinensis; type=EST; length=811bp
CAAGAAGAGACATTATATGCCAGCTTCCTTGGTATTAGCTGTAAGTAATA
GTAGTTTTTACAATAAGTTCACTAATGACTAGTGATAATGAAGAACACTC
TTTTGCCATTGCCCATTGTCGAGAAAAACTAACTTAAAAAGCCCAAATTA
CAAAACTTGAAACTAAATTATTCCTTTTGAAGAACTTGAAAGTTCAGTAG
TTTCAGTGCCCAGTGAAGTACCACTGAAGAGTAGGAGCTTGATCAACTGA
AAAGATATTGCATGGATCCTCGGGATTAAACAACAGGCTTTGCTCTTCAA
CTTTCACAAGTTGAGGCTGCTGATAGACATTACTCAATATTGTTCTCGAA
TCAGAAAACTGAACCCAGTTCATTGATGGATGCGAAGAGGAAGAAGAGCC
AGTGAAAAGAGGGGAAAAAGAAGGTGGGGATGTCAATAGCTGAGCATTTG
CATTTTCACTTGAAACGTGGTTTTTGCTCTGTTCGGAAACAGGGGCCTCT
GCCTCAACAGCATGACTAGTCTCTTCATTTTCTTGGCAAAGCTTAGCTTT
CAATTCCCTTAACTCAGCAGTAAGGGCTTCATTTTCTTGTTGAAGATTAT
TGTAGTCAAGCCTTAAAGCATCATAGTTAGCTTTGAGAAGGCCATAGTCT
CTCTCCAATTCTTTGCTCTTCAAACGAGCGCGCCGGTTTTGGAACCAAAC
AGCAATTTGTCGCGGTTGCAGTCCCAATTCTTCAGCTAATTTAACTTTCC
TATCAGGCTCTAGCTTGTTATCGACCTCAAAATTCTTCTCCAAGGCCTTA
ACTTGAACCAC
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