CV884401

Overview
NameCV884401
Unique NameCV884401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884401_ssr847 microsatellite CV884401_ssr847:847..858. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:455..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.783e-98
Identity = 181/220 (82.27%), Postives = 188/220 (85.45%), Query Frame = -3
Query:  205 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 864
            PF           ELDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF+ DPQT              EDAAA I+ES T+KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK LREAGVTVVESPAKIGS M E+FKQRG+
Sbjct:  110 PFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKTQKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQRGM 329          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 5.783e-98
Identity = 179/220 (81.36%), Postives = 190/220 (86.36%), Query Frame = -3
Query:  205 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 864
            PF           ELDL+VCITEGIPQHDMVRVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF VDPQT              EDAAALIKE+GT+KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK+LR+AGV VVESPAKIG+AM E+F++RGL
Sbjct:  120 PFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGL 339          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 6.394e-97
Identity = 179/220 (81.36%), Postives = 187/220 (85.00%), Query Frame = -3
Query:  205 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 864
            PF           ELDL+VCITEGIPQHDMVRVK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF VDPQT              EDAAALIK SGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK+L +AGV VVESPAKIGSAM E+F++RGL
Sbjct:  125 PFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGL 344          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 291.582 bits (745), Expect = 3.897e-78
Identity = 140/204 (68.63%), Postives = 166/204 (81.37%), Query Frame = -3
Query:  211 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 822
            ++LVVCITEGIPQ DMV+VK  LN+Q+KTRLIGPNCPGIIKPGECKIGIMPG+IHKPG++GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDPFNGTNF+DCL+ F  DPQT              E+AA  + ++ T+KPVV+FIAGL+APPGRRMGHAGAI+SGGKG A  KI+ L+ AGVTV  SPAK+G  +L+   ++
Sbjct:  109 MELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDKPVVSFIAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETILQKMNEK 312          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.173e-74
Identity = 139/204 (68.14%), Postives = 159/204 (77.94%), Query Frame = -3
Query:  220 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKE---SGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 822
            + LVVCITEGIPQHDMVRVK+ L +Q+KTRL+GPNCPGII   +CKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VG GQ+ CVGIGGDPFNGTNF+DCL  FL DP+T              E+AAA +KE       KPVV+FIAG+TAPPGRRMGHAGAI+SGGKGTA DKI  LREAGV V +SPAK+G++M   F
Sbjct:  115 IPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAAAYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTDSPAKLGTSMATAF 318          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 2.614e-74
Identity = 142/221 (64.25%), Postives = 164/221 (74.21%), Query Frame = -3
Query:  211 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 864
            PF           E+ LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPGII PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+GIGGDPFNGTNF+DCL+ FL DP T              E+AA  +KE  +    KPVV+FIAG+TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ M + F++R
Sbjct:  123 PFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFEKR 343          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 275.789 bits (704), Expect = 2.213e-73
Identity = 140/221 (63.35%), Postives = 164/221 (74.21%), Query Frame = -3
Query:  211 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 864
            PF           E+ LVVCITEGIPQ DMVRVK  L RQ  TRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+GIGGDPFNGT+F+DCLE FL DP T              E+AAA +KE  +    KPVV+FIAG+TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ + + F++R
Sbjct:  123 PFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEKR 343          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 274.633 bits (701), Expect = 4.930e-73
Identity = 142/221 (64.25%), Postives = 163/221 (73.76%), Query Frame = -3
Query:  211 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 864
            PF           E+ LVVCITEGIPQ DMVRVK  L RQ KTRL+GPNCPG+I PGECKIGIMPG+IHK GRVGIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F DCLE FL DP T              E+AA  +K+  +    KPVV+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ M + F++R
Sbjct:  123 PFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLGTTMYKEFEKR 343          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.434e-72
Identity = 141/221 (63.80%), Postives = 163/221 (73.76%), Query Frame = -3
Query:  211 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 864
            PF           E+ LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F DCLE FL DP T              E+AA  +K+  +    KPVV+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ + + F++R
Sbjct:  123 PFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKR 343          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 271.937 bits (694), Expect = 3.196e-72
Identity = 140/221 (63.35%), Postives = 163/221 (73.76%), Query Frame = -3
Query:  211 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGT---EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQR 864
            PF           E+ LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F+DCLE FL D  T              E+AA  +K+  +    KPVV+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G+ + + F++R
Sbjct:  123 PFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEKR 343          
The following BLAST results are available for this feature:
BLAST of CV884401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCA_ORYSJ5.783e-9882.27Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA2_ARATH5.783e-9881.36Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA1_ARATH6.394e-9781.36Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA_DICDI3.897e-7868.63Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_CAEEL1.173e-7468.14Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA_RAT2.614e-7464.25Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE2.213e-7363.35Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN4.930e-7364.25Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_PIG1.434e-7263.80Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_HUMAN3.196e-7263.35Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884401 ID=CV884401; Name=CV884401; organism=Citrus sinensis; type=EST; length=866bp
TTTTTTTTTTTTTTTGAAAAGCTTTATTAATTGTATAATCAATTCCCGTT
AGGTGCTGAATGGGGGGGAAAACTTTGAATTTCCAAGAACTCTACCAGAA
TCAAAATCAATTTCAAAATAAAAATGCTGAGAAGCACAATTTTTTGACAT
TGTGCAAAAAAGCTGTATAGAAATCTAGTGTTTCTTTTATCAAAACTAAC
TTGCCAGGCCACGTTGCTTGAAAACCTCAAGCATAGCAGAGCCAATTTTT
GCGGGAGACTCTACCACTGTCACTCCGGCTTCCCTGAGGGTCTTAATTTT
GTCTTGAGCCGTGCCCTTCCCACCAGAGACGATAGCTCCAGCATGACCCA
TACGGCGGCCAGGGGGAGCTGTTAGTCCAGCAATAAAAGCAACAACGGGC
TTCTCAGTCCCACTTTCCTTTATCAAGGCAGCGGCATCCTCTTCTGCAGT
CCCACCGATCTCTCCTATTAGAATAATACCTTCTGTCTGGGGATCAACTA
GGAACTTTTCAAGGCAATCAACAAAGTTTGTCCCATTAAAAGGATCCCCA
CCTATACCTACACAGGTTGATTGTCCAAGGCCAACTACAGTTGTTTGAAA
AACTGCTTCGTAGGTCAAGGTACCAGATCGAGAAACAATTCCAACCCGCC
CAGGTTTGTGAATATACCCAGGCATAATGCCAATCTTACATTCTCCAGGT
TTGATGATACCAGGGCAGTTGGGACCAATCAGCCGAGTTTTAGATTGCCT
GTTTAGAGCAGCTTTCACTCGCACCATATCGTGTTGAGGGATTCCTTCGG
TGATACAGACGACAAGATCCAACTCAGCCTCCATAGCCTCCATGATAGCA
GCAGCAGCAAATGGCG
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