CV884228

Overview
NameCV884228
Unique NameCV884228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 218.394 bits (555), Expect = 2.642e-56
Identity = 115/221 (52.04%), Postives = 154/221 (69.68%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKG-ELESFLVEITADIFKVKDEYGEGE-LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLA 658
            YD+LK V GL+ +EL ++F  WNK  EL+SFL+EITADIF   D+ G G+ LV+ ILD  G KGTG+WTV+ A E+ VA PTI A+++ R LS +K ER+ A+++L    + +         D++  ID VR ALY SKICSYAQGM LL   S    + LN GELARIWKGGCIIRA FL++IK+AY  +P LA+L++ PEF + ++ RQ AW+RV+ +A
Sbjct:  201 YDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEITADIFTKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNARILSSIKAERQAASEILS-GPITEPFSG-----DRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYNYGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVIAIA 415          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 210.69 bits (535), Expect = 5.508e-54
Identity = 111/220 (50.45%), Postives = 147/220 (66.82%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLAI 661
            Y +LK V GLS  EL E+F EWNKGEL+S+L+EITADIF  KDE     LVD ILDK G KGTGKWT Q A +L V  P I  S+  R++S +KEER KA+ +L    +K   +N      K+ LI+ VR+AL+ SKICSYAQG   +++ S E  W+L +GE+A I++GGCIIRA FL +IK+AY R P L +L++D  F   +   Q A ++V+ LA+
Sbjct:  200 YFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASGLLSGPEVKPVTEN------KEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAV 413          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_LACLA (6-phosphogluconate dehydrogenase, decarboxylating OS=Lactococcus lactis subsp. lactis GN=gnd PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.772e-52
Identity = 109/220 (49.55%), Postives = 144/220 (65.45%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLAI 661
            YD+LK V GLSNAE+  IF+EWN+GEL+S+L+EIT ++ K KD+ GEG +VDKILDK G KGTGKWT + A +L V  P I  S+  RY+S  K+ER KA+KVL           V    DKK +I+ +R+ALY SKI SYAQG   LR  S E  W+L +G +A+IW+ GCIIRA FL  I  A+ ++  L +L++D  F     + Q A + VV LA+
Sbjct:  202 YDLLKRVLGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPA-------VNFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAV 414          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_LACLM (6-phosphogluconate dehydrogenase, decarboxylating OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gnd PE=1 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 108/220 (49.09%), Postives = 144/220 (65.45%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLAI 661
            YD+LK + GLSNAE+  IF+EWN+GEL+S+L+EIT ++ K KD+ GEG +VDKILDK G KGTGKWT + A +L V  P I  S+  RY+S  K+ER KA+KVL    L           DKK +I+ +R+ALY SKI SYAQG   LR  S E  W+L +G +A+IW+ GCIIRA FL  I  A+ ++  L +L++D  F     + Q A + VV LA+
Sbjct:  202 YDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPAL-------DFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAV 414          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNY3 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803) GN=gnd PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.794e-52
Identity = 110/220 (50.00%), Postives = 144/220 (65.45%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNK-GELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLA 658
            YD+LK+  GLSN +L E+F +WN+  EL SFL+EI+ DIF  KD    G L+D ILD  G KGTG+WTV    EL V  PTI A+++ R +S LKEER  A+  L  +G            D +  I  VR ALY SK+CSYAQGM L+   S E G+++N  E+ARIWKGGCIIRA FLD+IKKA++ NP L +L++ PEF + ++ RQ  W+ V+ LA
Sbjct:  211 YDILKNGLGLSNEQLHEVFGQWNQTDELNSFLIEISTDIFAKKDPETGGHLIDYILDAAGQKGTGRWTVMSGLELGVPIPTIYAAVNARVMSSLKEERVAASGQL--SGPSKTFSG-----DVEAWIPKVRDALYCSKMCSYAQGMALIAKASQEFGYDVNLPEIARIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREVLMLA 423          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_SHEEP (6-phosphogluconate dehydrogenase, decarboxylating OS=Ovis aries GN=PGD PE=1 SV=4)

HSP 1 Score: 198.749 bits (504), Expect = 2.166e-50
Identity = 104/220 (47.27%), Postives = 141/220 (64.09%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLAI 661
            Y ++K V GL + E+A+ F+EWNK EL+SFL+EITA I K +D  G+  L+ KI D  G KGTGKWT   A E  V    I  ++  R LS LK+ER +A+K LK        QN+    DKK  ++D+R+ALYASKI SYAQG  LLR  + E GW LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D  F   +   Q +W+R +   +
Sbjct:  202 YHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGP------QNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGV 414          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_MOUSE (6-phosphogluconate dehydrogenase, decarboxylating OS=Mus musculus GN=Pgd PE=2 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 1.834e-49
Identity = 102/220 (46.36%), Postives = 144/220 (65.45%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLAI 661
            Y ++K V G+ + E+A+ F+EWNK EL+SFL+EITA+I K +D  G+ EL+ KI D  G KGTGKWT   A E  +    I  ++  R LS LKEER +A++ LK   +      V +   KK  ++D+R+ALYASKI SYAQG  LLR  + E GW LN+G +A +W+GGCIIR+VFL +IK A++RNP L +L++D  F   +   Q +W+RV+   +
Sbjct:  202 YHLMKDVLGMRHEEMAQAFEEWNKTELDSFLIEITANILKYRDTDGK-ELLPKIRDSAGQKGTGKWTAISALEYGMPVTLIGEAVFARCLSSLKEERVQASQKLKGPKV------VQLEGSKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFERNPELQNLLLDDFFKSAVDNCQDSWRRVISTGV 414          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.395e-49
Identity = 105/220 (47.73%), Postives = 140/220 (63.64%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLAI 661
            Y ++K + G+S+ E+++ F EWN GELES+L+EIT DIF   D+  E  LV+KILD  G KGTGKWT   A EL V    I  S+  R++S +KEER  A+K LK  G K   +      DKK  ++ +R+ALY SKICSYAQG   +R  S +  WNL  GELA IW+ GCIIRA FL +IK AY  N NL +L++DP F   +++ Q A + VV  ++
Sbjct:  200 YAMMKDLLGMSHKEISQTFKEWNAGELESYLIEITGDIFNKLDDDNEA-LVEKILDTAGQKGTGKWTSINALELGVPLTIITESVFARFISSIKEERVTASKSLK--GPKAHFEG-----DKKTFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSV 411          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_STAEQ (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gnd PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.395e-49
Identity = 105/220 (47.73%), Postives = 140/220 (63.64%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLAI 661
            Y ++K + G+S+ E+++ F EWN GELES+L+EIT DIF   D+  E  LV+KILD  G KGTGKWT   A EL V    I  S+  R++S +KEER  A+K LK  G K   +      DKK  ++ +R+ALY SKICSYAQG   +R  S +  WNL  GELA IW+ GCIIRA FL +IK AY  N NL +L++DP F   +++ Q A + VV  ++
Sbjct:  200 YAMMKDLLGMSHKEISQTFKEWNAGELESYLIEITGDIFNKLDDDNEA-LVEKILDTAGQKGTGKWTSINALELGVPLTIITESVFARFISSIKEERVTASKSLK--GPKAHFEG-----DKKTFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSV 411          
BLAST of CV884228 vs. ExPASy Swiss-Prot
Match: 6PGD_SCHPO (6-phosphogluconate dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe GN=SPBC660.16 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.085e-49
Identity = 102/219 (46.58%), Postives = 140/219 (63.93%), Query Frame = 2
Query:    2 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWKRVVGLA 658
            YD++K   G+S  E+A++F++WN G+L+SFL+EIT D+ + K + G+  LV+KILD  G KGTGKWT Q A E+      I  ++  R LS LK ER +A+K L     K          DKK+LIDD+  ALYASKI SYAQG  L+R  + E GW LN   +A +W+GGCIIR+VFL  I +A++ +PNL S++  P F   + + QA W+RVV  A
Sbjct:  205 YDIMKRGLGMSCDEIADVFEKWNTGKLDSFLIEITRDVLRYKADDGK-PLVEKILDAAGQKGTGKWTAQNALEMGTPVSLITEAVFARCLSSLKSERVRASKKLTGPNTK-------FTGDKKQLIDDLEDALYASKIISYAQGFMLMREAAKEYGWKLNNAGIALMWRGGCIIRSVFLKDITEAFREDPNLESILFHPFFTNGVEKAQAGWRRVVAQA 415          
The following BLAST results are available for this feature:
BLAST of CV884228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SYNE72.642e-5652.046-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_BACSU5.508e-5450.456-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_LACLA1.772e-5249.556-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_LACLM3.022e-5249.096-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNY38.794e-5250.006-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHEEP2.166e-5047.276-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_MOUSE1.834e-4946.366-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAES2.395e-4947.736-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAEQ2.395e-4947.736-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SCHPO4.085e-4946.586-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884228 ID=CV884228; Name=CV884228; organism=Citrus sinensis; type=EST; length=661bp
TTACGATGTTTTGAAGCACGTGGGTGGACTCAGCAATGCCGAGTTAGCGG
AGATATTTGATGAGTGGAATAAGGGCGAGTTGGAGAGTTTCTTGGTTGAG
ATCACTGCTGATATTTTCAAGGTGAAGGATGAATATGGTGAGGGTGAGCT
TGTTGATAAGATTTTGGATAAGACCGGAATGAAAGGGACCGGCAAATGGA
CCGTTCAGCAAGCTGCTGAGCTCTCAGTCGCTGCCCCAACCATTGCTGCG
TCGTTGGATTGTAGGTACTTGAGCGGCTTGAAAGAGGAAAGAGAGAAAGC
CGCCAAGGTCTTGAAAGAGGCGGGATTGAAAGATGAGGTTCAAAATGTGG
GAGTACATGTTGACAAGAAGAGATTGATTGATGATGTGAGGCAAGCGCTG
TATGCTTCCAAGATTTGTAGTTATGCGCAAGGGATGAATCTGTTGAGGAG
TAAGAGTAATGAGAAAGGATGGAATTTGAATTTTGGCGAATTGGCGAGGA
TTTGGAAAGGTGGGTGTATTATTAGAGCCGTTTTTTTGGATAGGATTAAG
AAGGCTTATCAGAGGAATCCAAATTTAGCTAGTTTGGTCGTGGACCCGGA
GTTTGCGAGGGAGATGGTGCAAAGGCAGGCTGCGTGGAAGAGAGTTGTGG
GGTTGGCTATT
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