CV884224

Overview
NameCV884224
Unique NameCV884224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:145..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CV884224 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.736e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:  121 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 363
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
The following BLAST results are available for this feature:
BLAST of CV884224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA5.736e-39100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA5.736e-39100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE5.736e-39100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE5.736e-39100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR5.736e-39100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL5.736e-39100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ5.736e-39100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH5.736e-39100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT5.736e-39100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT5.736e-39100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884224 ID=CV884224|Name=CV884224|organism=Citrus sinensis|type=EST|length=543bp
GACGATTTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGGAAACTCTTT
TAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGGGATTGG
GAAAGGGAGGCGCCAAGCCTCACCGTAAGGTGCTTCGCGATAACATTCAG
GGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGGTGGAGTCAA
GCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTGAAGATAT
TCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCACGCCAGG
AGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG
CAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTTCTGGAATTA
AATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGATGGGGCTCTT
AGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAGTTAAATCTT
ATCTTTATATTTGAGGCAATATAGAACTGTTTTCTTTGAAAAA
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