CV884222

Overview
NameCV884222
Unique NameCV884222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3323 contig Csv1_Contig3323:935..1720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_RAT (Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763
            ++ DW I +C+  WWRPNFE   YPY P HITKPKE KKLFLV L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct:  135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224          
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763
            ++ DW I +C+  WWRPNFE   YPY P HITKPKE KKLFLV L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct:  135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224          
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763
            ++ DW I +C+  WWRPNFE   YPY P HITKPKE KKLFLV L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct:  135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224          
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763
            ++ DW I +C+  WWRPNFE   YPY P HITKPKE KKLFLV L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct:  135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224          
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763
            ++ DW I +C+  WWRPNFE   YPY P HITKPKE KKLFLV L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct:  135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224          
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_XENLA (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.369e-30
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = -3
Query:  494 DWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 754
            DW I +C+  WWRPNFE   YPY P HITKPKE KKLFLV L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct:  138 DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224          
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_DANRE (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.369e-30
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = -3
Query:  494 DWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 754
            DW I +C+  WWRPNFE   YPY P HITKPKE KKLFLV L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct:  139 DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 225          
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_DICDI (Cleavage and polyadenylation specificity factor subunit 5 OS=Dictyostelium discoideum GN=cpsf5 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  494 SPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 772
            +P     W+IG+ V+ WWRPNFE  ++PY P HITKPKECKKLF+V L E+  FAV  NL L+AV L+E+Y+N QRYG VIS+IP  +SR+ F
Sbjct:  102 TPVSDAPWEIGDHVSTWWRPNFEPSLFPYIPSHITKPKECKKLFVVTLPEKCKFAVSNNLSLIAVSLYEIYNNSQRYGAVISSIPALISRYTF 194          
The following BLAST results are available for this feature:
BLAST of CV884222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CPSF5_RAT2.579e-3065.56Cleavage and polyadenylation specificity factor su... [more]
CPSF5_PONAB2.579e-3065.56Cleavage and polyadenylation specificity factor su... [more]
CPSF5_MOUSE2.579e-3065.56Cleavage and polyadenylation specificity factor su... [more]
CPSF5_HUMAN2.579e-3065.56Cleavage and polyadenylation specificity factor su... [more]
CPSF5_BOVIN2.579e-3065.56Cleavage and polyadenylation specificity factor su... [more]
CPSF5_XENLA3.369e-3067.82Cleavage and polyadenylation specificity factor su... [more]
CPSF5_DANRE3.369e-3067.82Cleavage and polyadenylation specificity factor su... [more]
CPSF5_DICDI2.260e-2658.06Cleavage and polyadenylation specificity factor su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884222 ID=CV884222; Name=CV884222; organism=Citrus sinensis; type=EST; length=786bp
TGATTTTCTTCTGATTAACTACTAGTCATACAGAAATGTTACAATGAGCA
ACAAGCTCATACAGGTTACAGTAGCAGCATGATCAGCTCTGCCAGGAAAA
TTTTGCAAAGAGATCAAGCCTCCACAATCTGTCAAATCCCACAATGGTGA
CACCTTTCAACATTCTGACATGATGTCAGCAAACATTATGTGGCTATAAA
AACTTGAACACAGACCAATATCGATTCACAAACTCAAGCATAGCACATAA
TAAATAAAATAGTACTAAATGAACAAACATAGATTAGTTTGTCACAATGT
CAAATGCGTCAGTCTTCCGCATAAATTGGGAAATCCACCCTAACCAACTC
AAAAGTTTGTCATGAAGTACCATCAGGTATCAGCACAAGGAATCGACGCA
CCATATATTCTTGGTAAAGCTCTAAGAATCTAAGTAGTATCATCCAGGAG
TGTGCTCTTGAAATCCATGCTAAAGTCAAGCGGTAATCATATTGAACTGG
AATCTGGAAAGCTGTTGAGGAATGGTTGAAATAACTGGCCCATATCTCTG
GACGTTATCATAGAGTTCAAACAGCGGTACAGCAAGGAGTTTCAAATTTT
TGGGCACAGCAAAGTACTCTCTCTCGGACAAGTGAACAAGGAAAAGCTTC
TTACACTCCTTTGGCTTTGTGATGTGGGGAGGGCAGTAAGGATACATTAT
GGTTTCAAAGTTTGGCCTCCACCAGATTGCAACACATTCACCAATCTGCC
AGTCAGGCACAAGAGCAGGAGAATTCGCCCCAAGCT
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