CV884222
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_RAT (Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30 Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3 Query: 494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763 ++ DW I +C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN YGP+IS++PQ LSRF F Sbjct: 135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30 Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3 Query: 494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763 ++ DW I +C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN YGP+IS++PQ LSRF F Sbjct: 135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30 Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3 Query: 494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763 ++ DW I +C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN YGP+IS++PQ LSRF F Sbjct: 135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30 Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3 Query: 494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763 ++ DW I +C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN YGP+IS++PQ LSRF F Sbjct: 135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30 Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3 Query: 494 LVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 763 ++ DW I +C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN YGP+IS++PQ LSRF F Sbjct: 135 VLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_XENLA (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.369e-30 Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = -3 Query: 494 DWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 754 DW I +C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN YGP+IS++PQ LSRF F Sbjct: 138 DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_DANRE (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.369e-30 Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = -3 Query: 494 DWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 754 DW I +C+ WWRPNFE YPY P HITKPKE KKLFLV L E+ FAVPKN KL+A PLFELYDN YGP+IS++PQ LSRF F Sbjct: 139 DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 225
BLAST of CV884222 vs. ExPASy Swiss-Prot
Match: CPSF5_DICDI (Cleavage and polyadenylation specificity factor subunit 5 OS=Dictyostelium discoideum GN=cpsf5 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26 Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = -3 Query: 494 SPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 772 +P W+IG+ V+ WWRPNFE ++PY P HITKPKECKKLF+V L E+ FAV NL L+AV L+E+Y+N QRYG VIS+IP +SR+ F Sbjct: 102 TPVSDAPWEIGDHVSTWWRPNFEPSLFPYIPSHITKPKECKKLFVVTLPEKCKFAVSNNLSLIAVSLYEIYNNSQRYGAVISSIPALISRYTF 194 The following BLAST results are available for this feature:
BLAST of CV884222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884222 ID=CV884222; Name=CV884222; organism=Citrus sinensis; type=EST; length=786bpback to top |