CV884220

Overview
NameCV884220
Unique NameCV884220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig182 contig Csv1_Contig182:76..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884220 vs. ExPASy Swiss-Prot
Match: SSM1_YEAST (Protein SSM1 OS=Saccharomyces cerevisiae GN=SSM1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.374e-13
Identity = 62/188 (32.98%), Postives = 97/188 (51.60%), Query Frame = -2
Query:  291 FKAYGSTLAGLRALGYDIGADDYHGFVHGRLPY-DFIKPDPQLRNLLCSITQR-KI----IFTNSDRNHAITCLKRLGIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFLDDNIKNVTAGKALGLRTV--LVGKTVN-----VGEADYALENVNNLPQVVPEIW 812
            +K YG  + GL  + + + A +Y+  V   LP  D +KPD  LRN+L  + Q  KI    +FTN+ +NHAI CL+ LGIAD FD +             +R D   ++ KP + A + A+  + +    +A F+DD+ KN+  G  LG++T   LV   VN       E    + ++  LP VV +++
Sbjct:  104 YKEYGLAIRGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGL--------TYCDYSRTD--TLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELPHVVSDLF 280          
BLAST of CV884220 vs. ExPASy Swiss-Prot
Match: PHM8_YEAST (Phosphate metabolism protein 8 OS=Saccharomyces cerevisiae GN=PHM8 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 55/173 (31.79%), Postives = 86/173 (49.71%), Query Frame = -2
Query:  321 FKAYGSTLAGLRALGYDIGADDYHGFVHGRLPY-DFIKPDPQLRNLLCSITQRKI-------IFTNSDRNHAITCLKRLGIADCFDQIICFETMNPNLSKATRPDEFPVLLKPSMDAMKLALHVANVDP-RHALFLDDNIKNVTAGKALGLRTVLVGKTVNVGEADYALENVN 812
            ++ YG ++ GL           Y+ F+   LP  D++KPD +LR LL ++ ++K+       +FTNS +NHAI C+K LGIAD FD I              RP E   + KP     + A   + +    +A F+DDN  NV +  ++G+     G  +++ E DY  E+ N
Sbjct:  101 YQEYGLSVKGLIKNKQIDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVKILGIADLFDGI--------TYCHYDRPIEEEFICKPDPKFFETAKLQSGLSSFANAWFIDDNESNVRSALSMGM-----GHVIHLIE-DYQYESEN 259          
The following BLAST results are available for this feature:
BLAST of CV884220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSM1_YEAST2.374e-1332.98Protein SSM1 OS=Saccharomyces cerevisiae GN=SSM1 P... [more]
PHM8_YEAST2.902e-1131.79Phosphate metabolism protein 8 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884220 ID=CV884220; Name=CV884220; organism=Citrus sinensis; type=EST; length=822bp
TTTTTTTTTTGGTGTTTTGTGACAACGGTTGCAATATTATTCAATACACG
TAGCAAAGTTACATAATTTGAGAGCATATACATTTTATTTTCAAATATGG
ACAGCACGTTAACATTCATGATACATATCAACAGTTGTAGAAACTGATTA
ACATGATATCTACACAGTGGGGCCCTAACCGAAACACGAACGGTTCTGAT
CTAGGCTCCCACTGGCGTGGTAGTGAGAATGGATTCCAATTCACTTCTGG
TGCGGCTGATCCTTTGATCGCCATCGTCCGATTGGCTGACCCATATCTCT
GGAACCACTTGAGGTAAGTTGTTGACATTCTCTAATGCATAATCCGCTTC
ACCGACGTTCACCGTCTTCCCAACCAAAACGGTGCGTAGTCCTAAAGCCT
TGCCGGCGGTGACATTTTTAATGTTGTCGTCAAGAAACAAGGCGTGACGA
GGATCAACATTAGCAACATGGAGGGCGAGTTTCATGGCGTCCATTGAAGG
CTTCAAAAGGACGGGGAATTCATCGGGACGAGTTGCTTTCGAGAGATTCG
GGTTCATTGTCTCGAAACAGATTATTTGATCGAAACAATCTGCTATTCCT
AGTCGTTTCAGACATGTAATTGCATGGTTCCTGTCCGAATTGGTGAAAAT
AATCTTTCTCTGGGTGATGCTGCATAAGAGGTTGCGTAGTTGAGGATCTG
GTTTGATAAAATCATACGGCAATCTTCCGTGCACGAAACCGTGGTAATCA
TCGGCACCAATATCATAGCCTAGAGCTCGCAAGCCAGCGAGGGTGCTGCC
GTAAGCTTTGAAAAGCTCAACT
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