CV884210

Overview
NameCV884210
Unique NameCV884210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884210_ssr54 microsatellite CV884210_ssr54:54..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10284 contig Csv1_Contig10284:452..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.388e-45
Identity = 89/158 (56.33%), Postives = 103/158 (65.19%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            ILYSM+G+ W   +FFWF Y ++  F+ FTLYGMM+VALTP  QI  I   FFLS WNLFSGFLIPR QIPIWWRWYYW SPVAWTLYG++TSQVGD +  V I G    M++K LLK+ FGF YD                   F   I  +NFQRR
Sbjct: 1297 ILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITG-VGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.464e-44
Identity = 87/158 (55.06%), Postives = 103/158 (65.19%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            ILYSM+G  W   +F WF Y ++ SF+ FTLYGMM++ALTP  QI  I   FFLSLWNLFSGFLIPR QIPIWWRWYYW +PVAWTLYGL+TSQVGD +  V I G    + +K LLK+ FGF++D                   F   I  +NFQRR
Sbjct: 1298 ILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISG-IGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.588e-41
Identity = 76/158 (48.10%), Postives = 100/158 (63.29%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            +L+SM+G+ W A +FF+F Y + M F  F++YGMM+VALTP  QI AI+  FFLS WNLFSGFLIPR  IP+WWRWYYW SPVAWT+YG+  SQVGD    +E+ G T  + V + LK+  G+ +D                   F   I  +N+Q+R
Sbjct: 1304 LLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.671e-40
Identity = 74/158 (46.84%), Postives = 100/158 (63.29%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+YSM+GF W   +FFW  + +  +F+ FT +GMM VA+TP   + +I++GFF ++WNLFSGF++PR +IPIWWRWYYW  P+AWTLYGLV SQ GD++     P +    TV+Q L+ +FGFK+D                   F L I   NFQRR
Sbjct: 1283 IVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQD----PLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.486e-39
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+YSM+GF WKA +F WF+++   SF+ +T YGMM V+LTP  Q+ +I +  F  ++NLFSGF IPR +IP WW WYYW+ PVAWT+YGL+TSQ GD+E  + + G    +TVKQ +KD +GF+ D                   F   I  +NFQ R
Sbjct: 1285 IIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.941e-39
Identity = 71/158 (44.94%), Postives = 101/158 (63.92%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y+M+GF WKA++FFWF+++   SF+ +T YGMM V+LTP  Q+ +I +  F  ++NLFSGF IPR +IP WW WYYW+ PVAWT+YGL+ SQ GD+E  +++ G    +TVKQ ++D +GF+ D                   F   I  +NFQ R
Sbjct: 1312 IVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 9.632e-39
Identity = 71/158 (44.94%), Postives = 98/158 (62.03%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y+MM F W   +FFWF ++  MSF+ FT YGMM VALTP  Q+ A+ +G F  L+NLFSGF+IPR +IP WW WYYW+ PVAWT+YGL+ SQ GD+E  +++PG     T+K  +++ +G+  D                   F   I  +NFQ+R
Sbjct: 1259 IIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.258e-38
Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I+Y+M+GF W   +FFW+L+++  + + FT YGMM VA+TP   + +I++ FF  +WNLFSGF+IPR ++P+WWRWYYW +PVAWTLYGLV SQ GDI+  +     +   TV+Q L+  FGFK+D                   F  AI   NFQRR
Sbjct: 1282 IVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKL-----SDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.780e-38
Identity = 73/158 (46.20%), Postives = 95/158 (60.13%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            I Y+M  F W A +F W+L+ +  S M FT YGMM  A+TP   + +I++  F  LWNLFSGF+IP  +IP+WWRWYYW +PVAWTLYGL+ SQ GD E +V++      + VKQLL+D  G+K+D                   F  AI   NFQRR
Sbjct: 1263 IFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
[Close]
BLAST of CV884210 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.065e-37
Identity = 68/158 (43.04%), Postives = 100/158 (63.29%), Query Frame = -3 
Query:  349 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXFTLAITLINFQRR 822
            ++YSM+G+ WKA +FF+FL+ ++ +F  FTL+ MM+VA T +  + A+L  F LS WN F+GF+IPR  IP+WWRW+YW +PV+WT+YG++ SQ  D +  V +PG + TM VK  L+ + GFK+D                   F   I  +NFQ+R
Sbjct: 1297 LIYSMIGYEWKADKFFYFLFFMIAAFAYFTLFSMMLVACTASEMLAAVLVSFVLSSWNNFAGFIIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVPGQSTTMVVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454
The following BLAST results are available for this feature:
BLAST of CV884210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
AB34G_ARATH1.388e-4556.33ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH4.464e-4455.06ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR2_NICPL1.588e-4148.10Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR1_NICPL6.671e-4046.84Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB35G_ARATH1.486e-3946.20ABC transporter G family member 35 OS=Arabidopsis ... [more]
AB36G_ARATH1.941e-3944.94ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB29G_ARATH9.632e-3944.94ABC transporter G family member 29 OS=Arabidopsis ... [more]
PDR1_TOBAC1.258e-3846.20Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB32G_ARATH4.780e-3846.20ABC transporter G family member 32 OS=Arabidopsis ... [more]
PDR5_ORYSJ1.065e-3743.04Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884210 ID=CV884210; Name=CV884210; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTCCATTAATTCTACATATTATATATATTTTTTAAC
TTTTATATATATATATATATACATGTTTGAAAATACTCTAGAAATTGTTG
AATACCCGAGTAAAGGAGGCAGTAAGTATACAGAAGTAACGGAATTGGAA
AGGGTCCTTGATCAAATTCAAGACTCTGCCATTCTGGTCTGGCGGCCTGC
AACAAAAATCTGGACAAAAGAATGATCAATGCACAAGGAATAAAGAATGC
GCAAAGTGGTAACAACCTTTTATTCCCCTCGCCTCATTCATGACTAACAA
TTACATCAAACATTTCCTACCATATGTTGGAGATTTTCGAGCTATTTATC
TCCTCTGGAAGTTAATTAAGGTGATGGCAAGGGTAAACACAAAGACGAAG
ACGAGAAGCCAGACAAGTTTGACTACAGCAACAACCGGAAGGAAGTCATA
CTTGAACCCGAAACTATCTTTTAGAAGCTGCTTCACTGTCATCGTAGCGG
TGCTTCCCGGAATTTCCACGTTGCCTTCTATGTCACCAACTTGACTTGTA
ACAAGGCCATAGAGTGTCCAAGCCACGGGAGAGAGCCAGTAGTACCACCT
CCACCAAATTGGGATTTGCACGCGAGGAATGAGAAAACCAGAGAACAAAT
TCCACAGGGAGAGGAAGAATCCGGAAAGTATGGCACCAATTTGCGGAGCT
GGAGTCAGTGCGACAATCATCATCCCATACAATGTGAATTGCATAAAGGA
CATCATTACCATGTACAAGAACCAGAAGAATCTTTTTGCTTTCCACGCAA
ATCCCATCATGGAGTATAGGATCA
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