EG358379

Overview
NameEG358379
Unique NameEG358379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length234
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5185 contig Csv1_Contig5185:99..332. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.408e-41
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ-DIDGAYFGTTFPHLFLMTYGHLKPQKA 233
            KNYDFGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCP+CED+YYPRSKYQ +IDGAYFGTTFPHLFLMTYGHLKPQKA
Sbjct:  189 KNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA 266          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.006e-41
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ-DIDGAYFGTTFPHLFLMTYGHLKPQKA 233
            KNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCP+CEDIYYPRSKYQ +IDGAYFGTTFPHLFLMTYGHLKP KA
Sbjct:  194 KNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKA 271          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.492e-38
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ-DIDGAYFGTTFPHLFLMTYGHLKPQK 230
            KNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCP+CEDIYYPRSKYQ +IDGAYFGTTFPHLFLM YG++KPQK
Sbjct:  189 KNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQK 265          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.367e-36
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ-DIDGAYFGTTFPHLFLMTYGHLKPQK 230
            KN DFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCP+CEDI YPRSK+Q +IDGAYFGTTFPHLFLMTYG+LKPQK
Sbjct:  183 KNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQK 259          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CK2B_DICDI (Casein kinase II subunit beta OS=Dictyostelium discoideum GN=csnk2b PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.284e-22
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            K  +FGRCPRV+C  QP LPVG +D+    TVK+YCPRC DI+ P+  ++  IDGAYFGTTFPHL L+TY  L P K
Sbjct:  114 KKAEFGRCPRVFCQNQPVLPVGLADMQGVDTVKVYCPRCNDIFNPKYRRHSHIDGAYFGTTFPHLLLITYPELIPTK 190          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_SCHPO (Casein kinase II subunit beta OS=Schizosaccharomyces pombe GN=ckb1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.242e-21
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRS-KYQDIDGAYFGTTFPHLFLMTYGHLKPQKA 233
            K  DFG CPRV C GQP LPVG SDI  + +VK+YCPRCED+Y P+S ++  IDGAYFGT+FPH+    Y  L   K+
Sbjct:  106 KKCDFGHCPRVLCNGQPMLPVGLSDIAHTKSVKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKS 183          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_CAEEL (Casein kinase II subunit beta OS=Caenorhabditis elegans GN=kin-10 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.721e-21
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 3
Query:    3 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            +++DFG CPRVYC  QP LP+G SD+P  + VK+YCPRC D++ PR S++Q  DG+YFGT FPH+    +  L+P++
Sbjct:  101 RDHDFGVCPRVYCENQPMLPIGLSDVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRR 177          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_XENLA (Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_RAT (Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
BLAST of EG358379 vs. ExPASy Swiss-Prot
Match: CSK2B_RABIT (Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.220e-20
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   12 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR-SKYQDIDGAYFGTTFPHLFLMTYGHLKPQK 230
            DFG CPRVYC  QP LP+G SDIP  + VK+YCP+C D+Y P+ S++   DGAYFGT FPH+  M +   +P++
Sbjct:  105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 178          
The following BLAST results are available for this feature:
BLAST of EG358379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CSK2C_ARATH2.408e-4193.59Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2B_ARATH7.006e-4193.59Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2E_ARATH2.492e-3889.61Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CSK2D_ARATH1.367e-3688.31Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CK2B_DICDI7.284e-2259.74Casein kinase II subunit beta OS=Dictyostelium dis... [more]
CSK2B_SCHPO1.242e-2157.69Casein kinase II subunit beta OS=Schizosaccharomyc... [more]
CSK2B_CAEEL4.721e-2151.95Casein kinase II subunit beta OS=Caenorhabditis el... [more]
CSK2B_XENLA5.220e-2054.05Casein kinase II subunit beta OS=Xenopus laevis GN... [more]
CSK2B_RAT5.220e-2054.05Casein kinase II subunit beta OS=Rattus norvegicus... [more]
CSK2B_RABIT5.220e-2054.05Casein kinase II subunit beta OS=Oryctolagus cunic... [more]

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Properties
Property NameValue
Genbank description12c5 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0012c5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358379 ID=EG358379; Name=EG358379; organism=Citrus sinensis; type=EST; length=234bp
ACAAGAACTATGACTTTGGGAGATGTCCCAGGGTCTACTGCTGTGGACAA
CCCTGCCTTCCGGTTGGTCAATCGGACATTCCTCGTTCAAGCACTGTGAA
AATATACTGCCCCAGATGTGAAGATATTTACTACCCTAGGTCCAAGTATC
AAGACATTGATGGAGCCTATTTTGGAACGACGTTTCCTCACCTCTTCCTG
ATGACTTACGGGCACCTCAAGCCACAAAAGGCAG
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