EG358375

Overview
NameEG358375
Unique NameEG358375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length334
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7030 contig Csv1_Contig7030:3..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EG358375 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 1.550e-32
Identity = 64/77 (83.12%), Postives = 73/77 (94.81%), Query Frame = 2 
Query:  101 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVD 331
            MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD
Sbjct:    1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVD 77
The following BLAST results are available for this feature:
BLAST of EG358375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH1.550e-3283.12ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank description12c4 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0012c4, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358375 ID=EG358375; Name=EG358375; organism=Citrus sinensis; type=EST; length=334bp
ACGCGGGGACCCTCAGAAAACACAAAAGCTTGTTGTTTGGGAGCTGAGAA
AATCAAAAAATTAAGAGAAAAGAAAAAGGGAAAATCAGTCGAGAGAGAAA
ATGAGCGGAGCTGGCAAGAAAATAGCTGACGTCGCATTCAAGGCCGGAAG
GACCATAGATTGGGAAGGGATGGCGAAGATGCTGGTCTCCGATGAGGCAC
GCAAGGAGTTCGCCACTCTCCGTCGCGCTTTCGACGAAGTCAACTCCACT
CTTCAGACCAAGTTCAGCCAGGAACCTGAACCTATTGACTGGGAGTATTA
CAGAAAAGGAATTGGCTCTCGCTTGGTGGACATG
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