EG358363

Overview
NameEG358363
Unique NameEG358363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358363_ssr68 microsatellite EG358363_ssr68:68..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6870 contig Csv1_Contig6870:1..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358363 vs. ExPASy Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 3
Query:   90 RGQLSRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 350
            RG+L   ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE+++
Sbjct:   11 RGKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVL 95          
BLAST of EG358363 vs. ExPASy Swiss-Prot
Match: NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  111 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 353
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of EG358363 vs. ExPASy Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  111 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 353
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of EG358363 vs. ExPASy Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  111 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 350
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVL 95          
BLAST of EG358363 vs. ExPASy Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  111 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 350
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of EG358363 vs. ExPASy Swiss-Prot
Match: NDUA2_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 6.515e-14
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  111 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 350
            ++E+RI LCQ          F+E+ Y ELK  N  LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of EG358363 vs. ExPASy Swiss-Prot
Match: NDUA2_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Mus musculus GN=Ndufa2 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.895e-13
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  111 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 350
            ++E+R+ LCQ          F+ + Y ELK  +P LPILIRECS ++P+LWARY  G EK + L+ L+  ++ +A+++++
Sbjct:   16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLNNLSADEVTRAMQNVL 95          
BLAST of EG358363 vs. ExPASy Swiss-Prot
Match: NDUA2_NEUCR (NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora crassa GN=nuo-10.5 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 3
Query:   81 MAWRGQLSRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 353
            M+ R   ++ +KE+R L CQ          F+ RNY  +K  NP  PILIR+ SG  P+++AR++ G EK   L+GL++ QI + +  LV+
Sbjct:    1 MSGRFAFNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARFEFGKEKSQSLEGLSDQQIEETVSSLVK 91          
The following BLAST results are available for this feature:
BLAST of EG358363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NDUA2_BOVIN4.080e-1645.98NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONPY9.090e-1645.68NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONAB9.090e-1645.68NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MACFA1.551e-1546.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_HUMAN7.695e-1545.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_GORGO6.515e-1443.75NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MOUSE1.895e-1340.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_NEUCR2.737e-1238.46NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS... [more]
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Properties
Property NameValue
Genbank description4b11 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl004b11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358363 ID=EG358363; Name=EG358363; organism=Citrus sinensis; type=EST; length=492bp
CGAGCGGCCGCCCGGGCAGGTACGCGGGAATTTATTCATCCGTTTCAAGA
CGGAAGCGAGAGCGAGCGAGAGAGAGAGAGATGGCATGGAGAGGACAATT
ATCTCGGAGCATGAAGGAACTGAGGATCTTACTCTGCCAGACTTCTCCTT
CAAGCTCCTCCACTAGATCATTTGTAGAGAGGAACTACAAGGAGTTGAAG
ACTTTAAACCCCAAACTTCCTATCTTGATTCGTGAGTGCAGTGGGATTGA
GCCCCAGTTATGGGCTAGATATGATATGGGTGTTGAGAAGGGCATTGGTT
TGGATGGTCTGAATGAGGCACAGATCGCAAAGGCACTCGAAGACCTTGTC
AGAGCTGGGGAAGCCCTTAAGCGTTGATATTGCTACTCTTTGATCCATAT
GAGATGAAATAAATGTGTTAGAAAAATCTTCCTATGACAGTTTGCTCTTT
TATTTAGCAATCATTTTGATGTACCTCGGCCGCGACCACGCT
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