EG358360

Overview
NameEG358360
Unique NameEG358360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358360_ssr93 microsatellite EG358360_ssr93:93..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13232 contig Csv1_Contig13232:43..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EG358360 vs. ExPASy Swiss-Prot
Match: DNAJ8_ARATH (Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 2 
Query:  266 RVKVICXXXXXXXXXXVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEVYDMVMNNFREE 496
            R KV+C          VMDPYKTL+I+  +SE EVKKAFRQLA +YHPDVCRG+NCGVQF  INE YD+V+   + +
Sbjct:   42 RSKVVCSSSSS-----VMDPYKTLKIRPDSSEYEVKKAFRQLAKKYHPDVCRGSNCGVQFQTINEAYDIVLKQIKNQ 113
The following BLAST results are available for this feature:
BLAST of EG358360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNAJ8_ARATH5.875e-1958.44Chaperone protein dnaJ 8, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank description9c1 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0009c1, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358360 ID=EG358360; Name=EG358360; organism=Citrus sinensis; type=EST; length=517bp
ACGCGGGCATTGAATCTCATCTATCCAAAAAAGAAAAAAAAAAGAAGAAG
AAAATCAAATTTTGCTTGTGGGATCTTTTGCTTTCAACGTATAAAGAAAG
AAAGAAAGAAAGAAAGATTAAAGCTTGTTGCTCGCGGCTTTGTGAGTTTT
TGATTTGAGAAAAATGGCAAGTGTTGCAGGGACGATCGGAGCAAATGGGT
CGTCGGGTTCATCATCTTCATGGACTCAGCTGAAGAATATGAAGAAGAAA
AAAATGATGATGGGCAGAGTCAAGGTCATTTGCTCTGCTTCTTATTCATC
TTCATCGTCTTCTGTTATGGATCCTTACAAGACTCTCAGGATTCAGCGTG
GTGCCTCTGAATCTGAGGTCAAGAAAGCCTTTAGGCAGCTTGCTTTGCAG
TATCATCCGGATGTATGCAGAGGAAACAATTGTGGAGTTCAGTTTCATCT
GATTAATGAAGTCTATGATATGGTGATGAATAATTTCAGGGAGGAACCCA
ATGAACCGGAGATTATG
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