CV712163

Overview
NameCV712163
Unique NameCV712163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2407 contig Csv1_Contig2407:66..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 1.702e-69
Identity = 132/157 (84.08%), Postives = 142/157 (90.45%), Query Frame = -2
Query:    1 IWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 471
            +WNSRVKIALGTARALEYLHEVCS S+V KNIKSANILLD+ELNP LSD GLAS +P A+E LN     GY APEV+MSGQY++KSD+YSFGVVMLELLTGRKPFDS+R R EQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC
Sbjct:  514 VWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLASFLPTANELLNQ-TDEGYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 669          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 2.223e-69
Identity = 132/157 (84.08%), Postives = 141/157 (89.81%), Query Frame = -2
Query:    1 IWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 471
            IWN RVKIALGTARALEYLHEVCS S+VHKNIKSANILLD+ELNP LSD GLAS +P A+E LN +   GY APE +MSGQY++KSDVYSFGVVMLELLTGRKPFDS+R R EQSLVRWATPQLHDIDAL KMVDPALKGLYPVKSLSRFADVIALC
Sbjct:  517 IWNPRVKIALGTARALEYLHEVCSPSIVHKNIKSANILLDSELNPHLSDSGLASFLPTANELLNQN-DEGYSAPETSMSGQYSLKSDVYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALGKMVDPALKGLYPVKSLSRFADVIALC 672          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.000e-61
Identity = 117/158 (74.05%), Postives = 133/158 (84.18%), Query Frame = -2
Query:    1 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDA-GS-GYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 468
            WN+RVK+ALGTA+ALEYLHEVC  S+VH+N KSANILLD ELNP LSD GLA+  PN +  ++    GS GY APE A+SG Y +KSDVY+FGVVMLELLTGRKP DSSR R EQSLVRWATPQLHDIDAL+KMVDP+L G+YP KSLSRFAD+IALC
Sbjct:  494 WNARVKVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAALTPNTERQVSTQVVGSFGYSAPEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDIDALSKMVDPSLNGMYPAKSLSRFADIIALC 651          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.944e-55
Identity = 108/156 (69.23%), Postives = 122/156 (78.21%), Query Frame = -2
Query:    1 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 468
            WN+RV+IALGTARA+EYLHE CS SV+HKNIKS+NILLD +LNP+LSD GL+       + L    G GY APE      Y  KSDVYSFGVVMLELLTGR PFD  +PR E+SLVRWATPQLHDIDAL+ + DPAL GLYP KSLSRFAD+IALC
Sbjct:  503 WNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRLSDYGLSKFYLRTSQNL----GEGYNAPEARDPSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWATPQLHDIDALSNIADPALHGLYPPKSLSRFADIIALC 654          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.470e-52
Identity = 101/156 (64.74%), Postives = 121/156 (77.56%), Query Frame = -2
Query:    1 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 468
            WN+R++IALGTA+A+EYLHE CS  +VHKNIKS+NILLDNELNP+LSD GLA    N     + + G GY APE      Y  KSDVYSFGVVMLELLTGRKP+DS RP+ EQSLVRWA PQL D+D L +MVDPAL GLY  +S+S FAD++++C
Sbjct:  514 WNTRIRIALGTAKAIEYLHETCSPPLVHKNIKSSNILLDNELNPRLSDYGLA----NFHHRTSQNLGVGYNAPECTDPSAYTQKSDVYSFGVVMLELLTGRKPYDSGRPKAEQSLVRWAKPQLKDMDTLDEMVDPALCGLYAPESVSSFADIVSIC 665          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 8.221e-48
Identity = 98/159 (61.64%), Postives = 117/159 (73.58%), Query Frame = -2
Query:    1 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNND---AGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 468
            WN+RV +ALG ARALEYLHEVC   ++H+N KSAN+LLD++L+  +SDCGLA  + +   +  +    A  GYGAPE   SG Y  +SDVYSFGVVMLELLTGR  +D  R R EQ LVRWA PQLHDIDAL KMVDP+L G YP KSLS FAD+I+ C
Sbjct:  584 WNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFD-SGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRC 741          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.074e-47
Identity = 101/159 (63.52%), Postives = 117/159 (73.58%), Query Frame = -2
Query:    1 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPN-ADEALNND--AGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 468
            WN RV+IAL  A+ALEYLHE+C    +H+N KSANILLD+++   +SDCGLA  + + A   L+    A  GYGAPE    G Y +K DVYSFGVVMLELLTGRK +D  R R EQ LVRWA PQLHDIDALAKMVDP+LKG YP KSLS FADVI+ C
Sbjct:  577 WNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISSGAVSQLSGQLLAAYGYGAPEFEY-GIYTMKCDVYSFGVVMLELLTGRKSYDKKRDRGEQFLVRWAIPQLHDIDALAKMVDPSLKGDYPAKSLSHFADVISRC 734          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 9.406e-44
Identity = 87/154 (56.49%), Postives = 115/154 (74.68%), Query Frame = -2
Query:    7 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIA 468
            WN R+ IALG ++AL++LHEVC   VVH+N KS+ +LLD +L+ +++D GLA  +P    +      +GY APEV   G Y  +SDV+S GVVMLELLTGR+PFD +RPR  Q+L +WA P+LHDIDAL +MVDP+L G YP+KSLSRFAD+I+
Sbjct:  596 WNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVRVADSGLAYMLPPRPTSQM----AGYAAPEVEY-GSYTCQSDVFSLGVVMLELLTGRRPFDRTRPRGHQTLAQWAIPRLHDIDALTRMVDPSLHGAYPMKSLSRFADIIS 744          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 76/162 (46.91%), Postives = 106/162 (65.43%), Query Frame = -2
Query:    1 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNNDAG------SGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 468
            W  R++IA+G ARAL+YLH      + H ++K+ NILLD EL P+++DCGLAS  P    ++   A       +GY APE    G    KSD Y+ GV++LELLTGRK FDSSRPR EQ LV+WA+ +LHD  +L +M+D  + G +  +  S++AD+I+LC
Sbjct:  512 WGLRLRIAIGVARALDYLHSSFCPPIAHSDLKATNILLDEELTPRIADCGLASLRPLTSNSVKLRASEIAIQNTGYIAPEHGQPGSSGTKSDTYALGVLLLELLTGRKAFDSSRPRGEQLLVKWASTRLHDRRSLEQMIDGGIAGTFSSRVASQYADIISLC 673          
BLAST of CV712163 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.608e-35
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = -2
Query:    1 WNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLASNMPNADEALNND---AGSGYGAPEVAMSGQYNIKSDVYSFGVVMLELLTGRKPFDSSRPRLEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALC 468
            W  RVKIA+G AR LEYLHE  +  ++H++IKS+N+LL  +   +++D  L++  P+    L++       GY APE AM+GQ N KSDVYSFGVV+LELLTGRKP D   PR +QSLV WATP+L + D + + VD  L G YP K++++ A V ALC
Sbjct:  174 WYQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSE-DKVKQCVDARLGGDYPPKAVAKLAAVAALC 331          
The following BLAST results are available for this feature:
BLAST of CV712163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
SRF6_ARATH1.702e-6984.08Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF7_ARATH2.223e-6984.08Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF8_ARATH1.000e-6174.05Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
SRF5_ARATH6.944e-5569.23Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF4_ARATH2.470e-5264.74Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
SRF3_ARATH8.221e-4861.64Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
SRF1_ARATH1.074e-4763.52Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
SUB_ARATH9.406e-4456.49Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
SRF2_ARATH1.455e-3646.91Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]
Y2706_ARATH1.608e-3550.31Probable receptor-like protein kinase At2g47060 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712163 ID=CV712163; Name=CV712163; organism=Citrus sinensis; type=EST; length=472bp
ACAAAGAGCAATGACATCTGCAAAACGGGAGAGAGATTTGACTGGGTAGA
GCCCTTTGAGTGCGGGATCAACCATTTTAGCAAGGGCATCAATGTCATGG
AGCTGAGGAGTTGCCCATCGAACCAAAGATTGCTCCAATCTTGGCCTCGA
GCTATCAAATGGTTTACGTCCAGTAAGAAGCTCCAGCATAACAACCCCAA
AACTGTAGACATCACTTTTTATATTATATTGACCAGACATGGCAACCTCA
GGTGCACCATATCCAGAACCAGCATCATTGTTCAATGCCTCATCTGCATT
TGGCATATTGCTTGCCAGGCCACAGTCAGAAAGTTGAGGATTGAGCTCGT
TGTCCAGTAATATGTTGGCCGACTTAATATTTTTGTGAACAACTGACAGT
GAGCAGACTTCATGCAGGTACTCCAGTGCTCGTGCAGTCCCCAAAGCAAT
CTTGACACGGGAGTTCCATATC
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