EY659843

Overview
NameEY659843
Unique NameEY659843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659843_ssr441 microsatellite EY659843_ssr441:441..452. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7467 contig Csv1_Contig7467:13..495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659843 vs. ExPASy Swiss-Prot
Match: PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.626e-11
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:   36 KEASIFLGVKWALVRCMNPPELDAPLFATDTEKEYKVVDPGMQDLQQN 179
            K+ S F G+ WAL+RC NPPEL+ P+F+ + E   KVVDP ++DLQ N
Sbjct:  947 KQHSFFKGINWALIRCTNPPELETPIFSGEAENGEKVVDPELEDLQTN 994

HSP 2 Score: 26.9498 bits (58), Expect = 1.626e-11
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1 
Query:   10 GSHEGANEIKKHPFF 54
            G  EGANE+K+H FF
Sbjct:  938 GCFEGANEVKQHSFF 952
The following BLAST results are available for this feature:
BLAST of EY659843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHOT1_ARATH1.626e-1154.17Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-F12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659843 ID=EY659843; Name=EY659843; organism=Citrus sinensis; type=EST; length=482bp
ACGAAATAAGGGTCGCATGAAGGAGCAAATGAAATAAAGAAGCATCCATT
TTTTTAGGCGTCAAATGGGCACTAGTTCGTTGCATGAACCCTCCTGAGCT
GGATGCCCCTCTCTTCGCTACCGATACTGAGAAGGAGTATAAAGTTGTGG
ATCCAGGAATGCAAGATCTGCAACAAAACGTTTTCTGAGGAGTCTAATTC
TTTGTTATTTTATTTGAAGTGTCTGCTGCAAATTTGTGTTGGTACGTGCA
TCCCATTTAGTAGAGGCTATGGAAGGGGAGCTCAACTTGACGAGTAATAA
CAGTTTCATTGATTCTGCTTGTGCTTTCACCTCGGCAGTTGTCGTCGATA
GATAATCTTGGAGGCCTTGTGTATGTAATATATTACTTGTATGCATCGTT
TGTATCTGTTTTGCTGGGTACTTTGTAAGTTTTGTATTTTATTAATTAAT
TAGTTAATTAATCCAAAAAAAAAAAAAAAAAA
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