GO241402

Overview
NameGO241402
Unique NameGO241402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4037 contig Csv1_Contig4037:149..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GO241402 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.476e-24
Identity = 58/126 (46.03%), Postives = 68/126 (53.97%), Query Frame = 1 
Query:    1 GPIPDXLGKMXXXXXXXXXXXXXXGKIPSXLLSXTGMGXLNLSRNAXGGNIPDVFGSKSYFMALDLSYNNLKXXXXXXXXXXXXXXXXXXXXNHLCGPIPVGSPFDXLEASSFDSNDCLCGNPLRT 378
            GPIP+ +G M              G IP  LLS +G+   NLSRNA  G IPDVFGSK+Y ++LDLS+N+L                     N LCG IP G PFD LEA+SF  N CLCG PL T
Sbjct:  245 GPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPLTT 370
The following BLAST results are available for this feature:
BLAST of GO241402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DR100_ARATH1.476e-2446.03DNA-damage-repair/toleration protein DRT100 OS=Ara... [more]
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Properties
Property NameValue
Genbank description50 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 133 5, mRNA sequence.