DT214582

Overview
NameDT214582
Unique NameDT214582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214582 vs. ExPASy Swiss-Prot
Match: TMX3_XENLA (Protein disulfide-isomerase TMX3 OS=Xenopus laevis GN=tmx3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.611e-22
Identity = 55/171 (32.16%), Postives = 97/171 (56.73%), Query Frame = -3
Query:  149 ITRFNINTLMETNKYLVMAVVEESKVQDIPPHMEQFKNMIESVIKNNRKRFHDAFLFGWIGTPDLANSIAIKKVPLPYLLVLNPSTNYHHIPDDEPHQLTPEAIAIFLESIKNRTAKVYGGNGFFTSLYRLYFEIFTSLAEMWKGNPILTSVLFGLPLGFLSLICYSMCCA 661
            I  F +  L +T K + +AV++E   ++      + K++ + V KNNR  FH  F FG +   D  NS+ + ++ +P  +VLN S   + +P    H   PE +  F+ SI + TA+  GG+G    + R++++  +++  ++K +P+L   LFGLPLG +S++CY +C A
Sbjct:  234 IDGFTLYELGDTGKLVAVAVIDE---KNNSIEHTRIKSIAQDVAKNNRNNFHRDFQFGHMDGNDYINSLLMDELSIPTFVVLNTSNQQYFLPSK--HIENPEEMIQFINSILDGTAEAQGGDGILQRIKRVFYDAKSTVVSVFKSSPLLGCFLFGLPLGVISIMCYGICTA 399          
BLAST of DT214582 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 48/168 (28.57%), Postives = 89/168 (52.98%), Query Frame = -3
Query:  149 FNINTLMETNKYLVMAVVEESKVQDIPPHMEQFKNMIESVIKNNRKRFHDAFLFGWIGTPDLANSIAIKKVPLPYLLVLNPSTNYHHIPDDEPHQLTPEAIAIFLESIKNRTAKVYGGNGFFTSLYRLYFEIFTSLAEMWKGNPILTSVLFGLPLGFLSLICYSMCCA 652
            F +  L +T K + +AV++E           + K++I+ V ++ R  FH  F FG +   D  N++ + ++ +P ++VLN S   + + D   H      +  F+ SI + T    GG+  F  L R+ F+  +++  ++K +P++   LFGLPLG +S++CY +  A
Sbjct:  240 FLLYELGDTGKLVAIAVIDEKNTS---LEHTRLKSIIQEVARDFRDHFHRDFQFGHMDGNDYINTLLMDELTVPTIVVLNTSNQQYFLLDR--HIKDASDMVQFINSILDGTVPAQGGDSIFQRLKRIVFDAKSTIVSIFKSSPLMGCFLFGLPLGVISIMCYGIYTA 402          
BLAST of DT214582 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 46/168 (27.38%), Postives = 91/168 (54.17%), Query Frame = -3
Query:  149 FNINTLMETNKYLVMAVVEESKVQDIPPHMEQFKNMIESVIKNNRKRFHDAFLFGWIGTPDLANSIAIKKVPLPYLLVLNPSTNYHHIPDDEPHQLTPEAIAIFLESIKNRTAKVYGGNGFFTSLYRLYFEIFTSLAEMWKGNPILTSVLFGLPLGFLSLICYSMCCA 652
            F +  L +T K + +AV++E           + K++I+ V ++ R  FH  F FG +   D  N++ + ++ +P ++VLN S   + + D +   +  E +  F+ +I + T +  GG+     L R+ F+  +++  ++K +P++   LFGLPLG +S++CY +  A
Sbjct:  237 FLLYELGDTGKLVALAVIDEKNTS---VEHTRLKSIIQEVARDYRDLFHRDFQFGHMDGNDYINTLLMDELTVPTVVVLNTSNQQYFLLDRQIKNV--EDMVQFINNILDGTVEAQGGDSILQRLKRIVFDAKSTIVSIFKSSPLMGCFLFGLPLGVISIMCYGIYTA 399          
BLAST of DT214582 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 46/168 (27.38%), Postives = 91/168 (54.17%), Query Frame = -3
Query:  149 FNINTLMETNKYLVMAVVEESKVQDIPPHMEQFKNMIESVIKNNRKRFHDAFLFGWIGTPDLANSIAIKKVPLPYLLVLNPSTNYHHIPDDEPHQLTPEAIAIFLESIKNRTAKVYGGNGFFTSLYRLYFEIFTSLAEMWKGNPILTSVLFGLPLGFLSLICYSMCCA 652
            F +  L +T K + +AV++E           + K++I+ V ++ R  FH  F FG +   D  N++ + ++ +P ++VLN S   + + D +   +  E +  F+ +I + T +  GG+     L R+ F+  +++  ++K +P++   LFGLPLG +S++CY +  A
Sbjct:  237 FLLYELGDTGKLVALAVIDEKNTS---VEHTRLKSIIQEVARDYRDLFHRDFQFGHMDGNDYINTLLMDELTVPTVVVLNTSNQQYFLLDRQIKNV--EDMVQFINNILDGTVEAQGGDSILQRLKRIVFDAKSTIVSIFKSSPLMGCFLFGLPLGVISIMCYGIYTA 399          
The following BLAST results are available for this feature:
BLAST of DT214582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TMX3_XENLA5.611e-2232.16Protein disulfide-isomerase TMX3 OS=Xenopus laevis... [more]
TMX3_MOUSE4.601e-1628.57Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]
TMX3_PONAB1.339e-1527.38Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]
TMX3_HUMAN1.339e-1527.38Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02C08_f2 Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 Citrus sinensis cDNA clone CS_WEd0002b_B04_VN, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214582 ID=DT214582; Name=DT214582; organism=Citrus sinensis; type=EST; length=666bp
AATACTTGGAAACAAACACCTGTAAAATTAGGTAGGAAATGACTAGAAAT
GTAAAAGATTCTCGAAAATATTCGAATCGTCACAATTATTCCTTCTTCTC
GTGGTCAGAATCTTCATCAAAATCATCTTCCTCTGCATCCATAATATCGG
CGCAACACATTGAATAACAAATGAGTGAAAGAAATCCAAGAGGTAAACCA
AAAAGAACCGATGTAAGAATTGGATTGCCTTTCCACATTTCTGCCAAGGA
AGTGAAAATTTCGAAGTACAACCTGTATAATGAAGTGAAAAATCCATTTC
CACCGTAGACCTTCGCTGTTCGGTTTTTAATGGATTCTAAAAATATAGCT
ATAGCTTCCGGTGTAAGCTGGTGTGGTTCATCATCAGGAATGTGGTGATA
ATTAGTAGACGGATTGAGAACTAGAAGATAGGGTAATGGAACCTTCTTAA
TCGCGATGGAATTGGCTAAATCTGGAGTACCGATCCAACCAAACAGAAAT
GCGTCATGAAAACGTTTTCTGTTGTTTTTGATGACTGACTCGATCATATT
TTTGAATTGCTCCATATGAGGTGGTATATCTTGAACTTTACTTTCCTCGA
CGACCGCCATAACTAAATATTTGTTCGTCTCCATGAGAGTATTAATATTG
AATCGTGTTATCTTCA
back to top