DT214543

Overview
NameDT214543
Unique NameDT214543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DT214543_ssr95 microsatellite DT214543_ssr95:95..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4444 contig Csv1_Contig4444:9..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214543 vs. ExPASy Swiss-Prot
Match: THI74_YEAST (Thiamine-repressible mitochondrial transport protein THI74 OS=Saccharomyces cerevisiae GN=THI74 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = -3
Query:  237 GAKVDVQKFFGYIGLFTFLGIWWLIWPLNAAGIEPPFRFPHSQXXXXXXXXXXXXXXXXSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIAN 590
            G ++D+Q F GY+G+FTFL  W ++  L+   +E  F  P S                 SDYFW  +++ T+PLV T+ ++ T+PLAM AD V     ++  YI G + +F  F + N
Sbjct:  233 GLRLDIQMFLGYVGIFTFLLFWPILIILDITHMET-FELP-SNFHISFLVMLNCIIIFVSDYFWCKALILTSPLVVTVALTFTIPLAMFADFVWREAFFTPWYIIGVIFIFVSFFLVN 348          
BLAST of DT214543 vs. ExPASy Swiss-Prot
Match: YGF3_SCHPO (Uncharacterized transporter C405.03c OS=Schizosaccharomyces pombe GN=SPBC405.03c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3
Query:  237 VDVQKFFGYIGLFTFLGIWWLIWPLNAAGIEPPFRFPHSQXXXXXXXXXXXXXXXXSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIAN 581
            V  + FFG +GLF  + +W  +  L+  G+E  F  P S                 SDY W ++++ T+PL+ T+GMSL++PLA+  D+++ G + +   I G L VFAGFI+ N
Sbjct:  222 VSTRLFFGLVGLFDLILLWPFLIILHLYGVER-FSLP-STTAGLIVLIINASITFVSDYLWVIAMLMTSPLLVTVGMSLSIPLALFFDILLKGHYLNFSLILGSLLVFAGFIVVN 334          
BLAST of DT214543 vs. ExPASy Swiss-Prot
Match: YMB8_YEAST (Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae GN=YML018C PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = -3
Query:  237 KVDVQKFFGYIGLFTFLGIWWLIWPLNAAGIEPPFRFPHSQXXXXXXXXXXXXXXXXSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIAN 584
            +V+++ FFG++GLF  L +W  +  L+  G EP F  P                   SD+ WA +++ T+PL  T+G+S+T+PLAM  D++   +  SA+Y+FG   +   F I N
Sbjct:  253 RVNMKIFFGFVGLFNLLFLWPSLIVLDFFGWEP-FSLP-KDPKVVVIIFVNCLITFVSDFCWAKAMLLTSPLTVTVGLSITIPLAMFGDVIFKHKTMSALYLFGATLILGSFFIIN 366          
BLAST of DT214543 vs. ExPASy Swiss-Prot
Match: S35F5_BOVIN (Solute carrier family 35 member F5 OS=Bos taurus GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = -3
Query:  231 KVDVQKFFGYIGLFTFLGIWWLIWPLNAAGIEPPFRFPHSQXXXXXXXXXXXXXXXXSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLL 584
            K+D+  FFG++GLF  L +W   + L+  G E  F FP+ +                S++ W      T+ L+ TL +SLT+PL+++ADM +    +S ++  G + VF  F IA LL
Sbjct:  357 KLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPN-KVVLMCIVINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIATLL 472          
The following BLAST results are available for this feature:
BLAST of DT214543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
THI74_YEAST9.944e-1434.75Thiamine-repressible mitochondrial transport prote... [more]
YGF3_SCHPO1.099e-1235.65Uncharacterized transporter C405.03c OS=Schizosacc... [more]
YMB8_YEAST4.178e-1233.62Uncharacterized vacuolar membrane protein YML018C ... [more]
S35F5_BOVIN3.537e-1133.05Solute carrier family 35 member F5 OS=Bos taurus G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_37C08_b2 Ruby Orange Developing Seed cDNA Library UCRCS09-2 Citrus sinensis cDNA clone UCRCS09-37C08-E16-1-4.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214543 ID=DT214543; Name=DT214543; organism=Citrus sinensis; type=EST; length=592bp
CTCAAACCATTAATCTAAGAATACATTGCAGCAAGTTCCTGCTCCCTTAA
AAGTCGGCATTTGTCACATTATAACAAAAATGAAAAAAAAAAAAATATAT
ATATATATATAAAACTAACTTATAGATTTTGATATATTAATGTACGCTGT
CTGCAAACATACTTTCAGTTATGTACATTTATGCATAATAGCTTCATCTG
CAACAACTCTATTTTAGCCGAGAATTTGTCCAAAAGATTAGCTATAATAA
AACCTGCAAAAACCTGAAGGCATCCAAAGATGTAGATTGCAGAGTAGTGA
CGGCCGTGTATAACCATGTCAGCCACCATTGCAAGGGGCATGGTCAAGGA
CATGCCCAGCGTCGCAACTAATGGAGTGGTCCAAACCACAGAGAGAGCCC
AAAAGTAGTCTGAGAGAACACTCCCCACCAAGCCATTTAGCAGCAGCACT
TCTCCAACTGATTGTGAATGTGGAAATCTGAATGGAGGTTCAATTCCTGC
AGCGTTCAGAGGCCATATGAGCCACCAAATACCAAGAAAAGTAAAGAGGC
CAATATATCCAAAGAACTTCTGCACATCGACCTTGGCTCCTT
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