DT214532

Overview
NameDT214532
Unique NameDT214532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DT214532_ssr287 microsatellite DT214532_ssr287:287..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DT214532 vs. ExPASy Swiss-Prot
Match: LEA2_CICAR (Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.954e-22
Identity = 63/137 (45.99%), Postives = 75/137 (54.74%), Query Frame = -1
Query:  371 MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQ----------------------XXXXXXXXXXXXXXXXXXGILKQTEEKVKDAAQSAADAVKHT 715
            M SHDQSYRAGE KG+TEE+TNQ + N+ DKAQAAK++  +AAQ AKDKTS+TAQ AK++   TA+A K KTQ                                        G L+QT EK K  AQ A DAVK T
Sbjct:    1 MTSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQQTAQAAKDKTQQTTQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGMAQGATDAVKQT 137          
BLAST of DT214532 vs. ExPASy Swiss-Prot
Match: LEA1_CICAR (Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.194e-21
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = -1
Query:  398 MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQXXXXXXXXXXXXXXXXXXGILKQTEEKVKDAAQ 715
            MASHDQSY+AGE  G+TEE+TNQ + N+ DKAQAAK++  +AAQ AKDKTS+TAQ AK++   TA+A K+KTQ                     +QT E  K+ AQ
Sbjct:    1 MASHDQSYKAGETMGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEKTQQTAQAAKEKTQQTAQAAKDETQQTAQAAKDKTQQTTEATKEKAQ 106          
BLAST of DT214532 vs. ExPASy Swiss-Prot
Match: LEAD7_GOSHI (Late embryogenesis abundant protein D-7 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.220e-20
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = -1
Query:  371 MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQXXXXXXXXXXXXXXXXXXGILKQTEEKVKDAAQSAADAVKHT 715
            MASH+QSY+AG  +G+  E+  Q  E++++KA+AAK +T E A+ AK KT ETA+ AKQ+  G AE    KT+                  GIL+Q  EKV++AAQ A DAVKHT
Sbjct:    1 MASHEQSYKAGRAEGRAHEKGEQMKESMKEKAEAAKQKTMETAEAAKQKTMETAEAAKQKTRGAAETTNDKTKQTAGAARGKAEETKETSGGILQQAGEKVRNAAQGATDAVKHT 115          
BLAST of DT214532 vs. ExPASy Swiss-Prot
Match: LEAD3_DAUCA (Late embryogenesis abundant protein Dc3 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.000e-14
Identity = 52/138 (37.68%), Postives = 68/138 (49.28%), Query Frame = -1
Query:  371 MASH-DQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQA----------------------KDKTSETAQQAKQRAAGTAEAGKQKTQXXXXXXXXXXXXXXXXXXGILKQTEEKVKDAAQSAADAVKHT 715
            MASH DQSY+AGE KG  +E+T Q  + ++DKAQAAKD+  E A  A                      KDKT ETAQ AK++  G  +A K+K                    G++    E+VK  AQ A +AVK+T
Sbjct:    1 MASHQDQSYKAGEPKGHAQEKTGQMADTMKDKAQAAKDKASEMAGSARDRTVESKDQTGSYVSDKAGAVKDKTCETAQAAKEKTGGAMQATKEKASEMGESAKETAVAGKEKTGGLMSSAAEQVKGMAQGATEAVKNT 138          
BLAST of DT214532 vs. ExPASy Swiss-Prot
Match: LEA76_BRANA (Late embryogenesis abundant protein 76 OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  386 MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQXXXXXXXXXXXXXXXXXXGILKQTEEKVKDAAQSAAD 715
            MAS+ QSY+AGE +G+T+E+T Q M  +RDKA+  KD+T + AQ+A+ K  ETAQ AK + +  A+  +QK Q                     + T++K ++ AQ+A D
Sbjct:    1 MASNQQSYKAGETRGKTQEKTGQAMGAMRDKAEEGKDKTSQTAQKAQQKAQETAQAAKDKTSQAAQTTQQKAQ-------ETAQAAKDKTSQAAQTTQQKAQETAQAAKD 103          
BLAST of DT214532 vs. ExPASy Swiss-Prot
Match: LEA3_ORYSJ (Late embryogenesis abundant protein, group 3 OS=Oryza sativa subsp. japonica GN=LEA3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 50/122 (40.98%), Postives = 58/122 (47.54%), Query Frame = -1
Query:  377 MASHDQ--SYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAA-------QQAKDKTSETAQQAKQRAAGTAEAGKQKTQXXXXXXXXXXXXXXXXXXGILKQTEEKVKDAAQSAADAVK 715
            MASH    SYRAGE K  TEE+  Q M   +DKA  AKDR  EAA       Q  K+ T E AQ AK+RA+ TA+A K KT                   G L +  E+ K  A   A A K
Sbjct:    1 MASHQDQASYRAGETKAHTEEKAGQVMGASKDKASEAKDRASEAAGHAAGKGQDTKEATKEKAQAAKERASETAQAAKDKTSSTSQAARDKAAESKDQTGGFLGEKTEQAKQKAAETAGAAK 122          
BLAST of DT214532 vs. ExPASy Swiss-Prot
Match: LEA3_ORYSI (Late embryogenesis abundant protein, group 3 OS=Oryza sativa subsp. indica GN=LEA3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 50/122 (40.98%), Postives = 58/122 (47.54%), Query Frame = -1
Query:  377 MASHDQ--SYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAA-------QQAKDKTSETAQQAKQRAAGTAEAGKQKTQXXXXXXXXXXXXXXXXXXGILKQTEEKVKDAAQSAADAVK 715
            MASH    SYRAGE K  TEE+  Q M   +DKA  AKDR  EAA       Q  K+ T E AQ AK+RA+ TA+A K KT                   G L +  E+ K  A   A A K
Sbjct:    1 MASHQDQASYRAGETKAHTEEKAGQVMGASKDKASEAKDRASEAAGHAAGKGQDTKEATKEKAQAAKERASETAQAAKDKTSGTAQAARDKAAESKDQTGGFLGEKTEQAKQKAAETAGAAK 122          
The following BLAST results are available for this feature:
BLAST of DT214532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LEA2_CICAR4.954e-2245.99Late embryogenesis abundant protein 2 OS=Cicer ari... [more]
LEA1_CICAR4.194e-2150.00Late embryogenesis abundant protein 1 OS=Cicer ari... [more]
LEAD7_GOSHI1.220e-2046.09Late embryogenesis abundant protein D-7 OS=Gossypi... [more]
LEAD3_DAUCA1.000e-1437.68Late embryogenesis abundant protein Dc3 OS=Daucus ... [more]
LEA76_BRANA3.802e-1438.18Late embryogenesis abundant protein 76 OS=Brassica... [more]
LEA3_ORYSJ1.597e-1240.98Late embryogenesis abundant protein, group 3 OS=Or... [more]
LEA3_ORYSI1.597e-1240.98Late embryogenesis abundant protein, group 3 OS=Or... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_7F12_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-7F12-L23-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214532 ID=DT214532; Name=DT214532; organism=Citrus sinensis; type=EST; length=838bp
CTAGAATACAAATCTTTACCCTTCTGCTATGACACTAATTAGAGAACACT
TAGCAATAAACAGCCTTCACTACCTTCTCAGAATGAAGGCTCAACGAAAG
AGTTAACAGTATTAAACTATCCTTCATCATTTATAAACTAATGAAGGGAC
TCAGAAAGAACATGCCCAAATTAGAGATAAACATTATTACATGACGACTC
TGAAAACAAAACACACAACACAAAGCATCACCTGCTGATATCAGACTTGA
ATCAGCAGCTGGTTATATCAGACTTGAATGAGTACTATTAATTAATTAAC
CCTTTGTATAAGTGTTCCTGTCGCGATCACCATAACGTTCCTCTTCTTCA
CCAGCGCCACCGAATCCGAAAGTGTGCTTCACGGCATCAGCAGCACTTTG
AGCAGCGTCCTTCACTTTCTCTTCGGTCTGTTTAAGAATGCCTCCTGTCT
TCTCCTTGGCTGCCTCCGCCTTCTCCCCGGTTGCCTGTCCCGTCTCCTGG
GTTTTCTGCTTCCCCGCCTCTGCCGTTCCTGCAGCCCTCTGCTTCGCCTG
CTGTGCCGTCTCAGAGGTCTTGTCCTTGGCCTGCTGAGCTGCCTCGTAAG
TCCTGTCCTTGGCTGCCTGCGCCTTGTCCCTCACATTCTCCATCGTCTGG
TTCGTCCTCTCCTCGGTCTGGCCTTTGACTTCACCAGCTCTGTAGCTCTG
ATCGTGGGATGCCATTTTGATATCTGAAAAGGGTGCTTAAAAGAGATTAA
TTTGCTGAAAGATTTAGTGGACGAGTATTTGATCGTTTGTGCCTGCTTGC
TTTGACAGACAAATTTTATACTGACACCATCACATGGC
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