FC871138

Overview
NameFC871138
Unique NameFC871138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13480 contig Csv1_Contig13480:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871138 vs. ExPASy Swiss-Prot
Match: ITPK4_ARATH (Inositol-tetrakisphosphate 1-kinase 4 OS=Arabidopsis thaliana GN=ITPK4 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 4.406e-58
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:  292 PNSGILMKSYERNGLRPILFDSLKSLPIDTENQNSGDSISCTVDLDLELIKDAAKWLAKTLDLTIFGFDVVIQEGTGDHVIVDLNYLPSFKEIDKHITIPAFWDAIKLKF 621
            P+S  L KS E NGL+PILFDSLKSLP+D+ NQN         ++DLEL+ +AA WL K LDLTIFGFDVVIQEGTGDHVIVDLNYLPSFKE+  +I +PAFW+AI+ +F
Sbjct:  377 PSSSSLRKSAEENGLKPILFDSLKSLPVDSANQNP------VSEIDLELVTEAATWLRKKLDLTIFGFDVVIQEGTGDHVIVDLNYLPSFKEVPDNIAVPAFWEAIRNRF 480

HSP 2 Score: 96.6709 bits (239), Expect = 4.406e-58
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 2 
Query:    2 PGVARLTSQLILLRLRQQKAKGRHASRGAHFLKVIDFKDPGLPQRLAYAQLSLPWIVKPQVACGTADSHRMAIVFGTEDFKYLNVPIPAVVQ 277
            P V RL  Q ILL L    A GR   RGA FLK+  + +P L Q L+ A LSLP IVKPQVACG AD+H MAIVF  EDFK LN P+PA++Q
Sbjct:  259 PVVDRLKMQHILLGLEGLGAAGRKI-RGACFLKIDSYDEPDLAQNLSRAGLSLPCIVKPQVACGVADAHSMAIVFRVEDFKNLNTPVPAIIQ 349
The following BLAST results are available for this feature:
BLAST of FC871138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ITPK4_ARATH4.406e-5866.36Inositol-tetrakisphosphate 1-kinase 4 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AB10FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871138 ID=FC871138; Name=FC871138; organism=Citrus sinensis; type=EST; length=621bp
CCCTGGAGTGGCACGGCTGACTAGCCAACTGATTCTACTTAGGCTGCGAC
AACAAAAAGCTAAGGGACGACATGCAAGTAGGGGCGCCCATTTTCTTAAG
GTTATTGATTTTAAAGATCCTGGCTTGCCACAAAGATTGGCATATGCACA
ACTTTCTCTTCCCTGGATAGTGAAACCTCAAGTTGCATGTGGTACGGCTG
ATTCTCACAGAATGGCAATTGTCTTTGGAACTGAAGATTTTAAATATTTG
AATGTTCCTATTCCTGCTGTTGTTCAGTTAAGAAGTCTACTCCGAACTCT
GGTATTCTGATGAAATCGTATGAAAGGAATGGACTTAGACCTATCCTCTT
TGACAGCTTAAAATCTCTACCCATCGACACTGAAAATCAAAATTCAGGAG
ATTCGATTTCCTGTACGGTTGATCTTGATCTTGAACTGATCAAAGATGCT
GCAAAGTGGCTTGCAAAAACACTTGATCTGACCATCTTTGGATTTGATGT
TGTCATTCAAGAAGGCACTGGTGACCATGTCATTGTAGATTTAAACTACC
TTCCATCATTCAAGGAAATAGATAAACATATCACCATACCCGCTTTTTGG
GATGCCATTAAACTGAAATTT
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