FC871122

Overview
NameFC871122
Unique NameFC871122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13478 contig Csv1_Contig13478:1..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871122 vs. ExPASy Swiss-Prot
Match: MYOH_DICDI (Myosin-H heavy chain OS=Dictyostelium discoideum GN=myoH PE=4 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 41/133 (30.83%), Postives = 77/133 (57.89%), Query Frame = 1 
Query:  223 DNIIKFLDSLMRRLR-EN-HVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWI-VSAKEEFAGTSWHELNYIRQAVGFLVIHQKRKKSLDEIRQDLCPALTVRQIYRICTMYWDD 612
            D I  +L+ +   L  EN ++ +   + L  Q+FSFIN  +FN +LLR++ C   +   +K  ++ELE W+ +   +E++ +   +L  +++ V  L+I  K +   DE+R ++CP L++ Q+ ++ TMY  D
Sbjct: 1542 DPITNYLNQIQISLSLENCYINNNLCKLLFEQLFSFINAMIFNEILLRKDLCCLRSSIPIKMNISELEHWVKLHHGKEWSSSVCDKLRLLKEVVYILMI-DKTQLQNDELRDEICPTLSIAQLKQLLTMYSPD 1673
The following BLAST results are available for this feature:
BLAST of FC871122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYOH_DICDI5.848e-1230.83Myosin-H heavy chain OS=Dictyostelium discoideum G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AA02FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871122 ID=FC871122; Name=FC871122; organism=Citrus sinensis; type=EST; length=821bp
GGAAGGCTTTCCTTTTGTTCAATCTGCATATCCAACAAAACTATTAAACA
ACAATTAAGTGCTTGTGTAAAGAAAATCTTTGGCTTGATTCGTGACAATT
TAAAGAAAGAATTGTCTCCACTATTGGGTTCATGCATCCAGGTGCCCAAA
ACTGCACGAGTACATGCTGGAAAATTATCTAGATCACCAGGTGTTCAGCA
GCAATCACATACTAGTCAGTGGGACAACATCATCAAATTTTTGGATTCTC
TTATGAGACGTTTGCGTGAGAATCATGTACCTTCCTTTTTCATCCGTAAG
CTCATTACCCAGGTTTTCTCTTTCATCAATATATCTCTTTTCAACAGTCT
GCTCCTGCGACGTGAATGTTGCACATTCTCAAATGGGGAATATGTGAAAT
CTGGTTTGGCAGAGCTAGAGAAATGGATAGTCAGTGCAAAGGAGGAGTTT
GCAGGAACTTCTTGGCACGAGCTAAATTATATTAGACAAGCAGTTGGATT
TCTGGTAATACATCAGAAGAGAAAAAAGTCTTTGGATGAGATTCGACAGG
ATTTATGTCCGGCATTGACGGTTAGGCAAATATATCGAATATGTACTATG
TACTGGGATGACAAATATGGCACACAGAGTGTATCAAATGAGGTGGTTGC
TCAAATGAGAGAGATCTTGAACAAGGACAATCATAATCTATCATCAAATT
CATTCTTGCTGGATGATGATCTAAGCATTCCTTTCTCAACAGAAGATATA
GATATGGCGATTCCTGTAACAGATCCTGCAGATACTCACATTCCAGCATT
TTTATCTGAATATCCTTGTGC
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