CX286805

Overview
NameCX286805
Unique NameCX286805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286805 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 2 
Query:  302 KRIPNVEIQNVLKVSFDDLDDEEKDIFLDIVCXXXXXXXXXXXXXLNACGFDAQIGISDLVNKSLIVIHDNKITMHDLLQE 544
            K  P     + +K S+D L+D EK+IFLDI C             L  CGF   +GI  LV KSL+ I +N++ MH+L+Q+
Sbjct:  361 KECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQD 441
The following BLAST results are available for this feature:
BLAST of CX286805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WRK16_ARATH8.631e-1139.51Probable WRKY transcription factor 16 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC01001C03Rv Veg1 Citrus clementina cDNA clone C01001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286805 ID=CX286805; Name=CX286805; organism=Citrus clementina; type=EST; length=546bp
AAAGACGTTGGCGTTTCTAATGTGGATGGCGTCCAACGTCTAGTTGTGGT
TGATGATAATGATCAGCCAAATCTGCCTTTGCCTGTTGTGTTATTTCCAG
CTGATAGTGGAAGATCTATGTTATTTCCGTCTCTGTAATGAATAAGCCAA
CAGGCTGTATTATTCTAAATAATGGACCAGGCTAGTACTCTTTAATCTCT
ATGGTTAAGCATAAATAAAATAGCCTATGATGCTTTCGCTGTTAGTTAAA
AAAAAAAAAAAAAAAAACCTCGTGCCGAATTCGGCACGAGGCGGCACGAG
GAAAAGAATTCCTAATGTGGAGATACAAAATGTGCTAAAAGTAAGTTTCG
ATGATCTGGATGATGAAGAGAAAGATATTTTTCTAGACATTGTTTGTTTC
TTTAAAGGGAAAGATAAAGACTTCATTATAAAATTTCTTAATGCTTGTGG
CTTTGATGCACAAATAGGAATAAGTGATCTTGTCAATAAGTCTCTTATTG
TCATACACGACAACAAAATAACAATGCATGATCTGTTACAAGAAAT
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