CX288499

Overview
NameCX288499
Unique NameCX288499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.973e-23
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    7 SEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 300
            +E++D   +G     G  G+ F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    + +ECPVCK  ++ + + P+YGRG+   +  +D  LK P RPQG+R
Sbjct:    4 AEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGS---QKPQDPRLKTPPRPQGQR 102          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    7 SEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 300
            +E++D   +G     G   + F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    D +ECPVCK  ++ + + P+YGRG+   +  +D  LK P RPQG+R
Sbjct:    4 AEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS---QKPQDPRLKTPPRPQGQR 102          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    7 SEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 300
            +E++D   +G     G   + F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    D +ECPVCK  ++ + + P+YGRG+   +  +D  LK P RPQG+R
Sbjct:    4 AEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS---QKPQDPRLKTPPRPQGQR 102          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   34 GSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIE 306
            G G   S F+CNICLD S+D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++    ++D   K P RPQG+R E
Sbjct:   31 GGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST---GQQDPREKTPPRPQGQRPE 118          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.596e-22
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   37 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIE 306
            SG   S F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++    ++D   K P RPQG+R E
Sbjct:   30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST---GQQDPREKTPPRPQGQRPE 116          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.596e-22
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   37 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIE 306
            SG   S F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++    ++D   K P RPQG+R E
Sbjct:   30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST---GQQDPREKTPPRPQGQRPE 116          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.596e-22
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   37 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIE 306
            SG   S F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++    ++D   K P RPQG+R E
Sbjct:   30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST---GQQDPREKTPPRPQGQRPE 116          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.596e-22
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   37 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIE 306
            SG   S F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++    ++D   K P RPQG+R E
Sbjct:   30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST---GQQDPREKTPPRPQGQRPE 116          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.887e-21
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 EVSEKKDDDEKGSGNDGSF-FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIE 306
            E     ++    S  D S  F+CNICLD ++D VV+ CGHLFCWPCL +WL    + + CPVCK  +    + PIYGRG  + +P +    K+P RP+G+R E
Sbjct:    4 ETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRK----KVPPRPKGQRSE 102          
BLAST of CX288499 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.924e-21
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   43 NDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIE 306
            N  + F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + P+YGRG++    ++D   K P RPQG+R E
Sbjct:   34 NQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGST---GQQDPREKTPPRPQGQRPE 118          
The following BLAST results are available for this feature:
BLAST of CX288499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_HUMAN8.973e-2344.12E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
RNF5_RAT1.531e-2244.12E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE1.531e-2244.12E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RN185_DANRE3.410e-2248.35RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RN185_RAT7.596e-2247.78RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_PONAB7.596e-2247.78RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_MOUSE7.596e-2247.78RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_HUMAN7.596e-2247.78RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RNF5_CAEEL2.887e-2143.69RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_CHICK4.924e-2146.59RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
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Properties
Property NameValue
Genbank descriptionC02001B03SK IF1 Citrus clementina cDNA clone C02001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288499 ID=CX288499; Name=CX288499; organism=Citrus clementina; type=EST; length=590bp
GAAGTATCGGAGAAGAAAGATGATGATGAGAAAGGTAGTGGAAATGATGG
GAGTTTCTTCGATTGCAATATCTGTTTAGATTTGTCTAGGGACCCTGTTG
TGACTTGCTGTGGTCACTTGTTCTGTTGGCCTTGCCTTTACAGATGGTTA
CACGTGCATTCAGATGCAAAGGAATGTCCAGTGTGCAAGGGTGAGGTCAC
GGTTAAAAATATCACACCTATATATGGTCGTGGGAATAGCACACGTGAAC
CAGAAGAGGACTCGAGTCTTAAGATCCCTCTAAGGCCCCAAGGACGGCGG
ATTGAGAGTTTGAGGCAAACCATTCAGAGAACTGCTTACAGTTTTCCAGT
AGAGGAGATGATCCGTCGTCTTGGAAGTAGATTTGATTTGGCCCGTGATT
TGACACCACTACGTGATGGCAGCAGTGCCAGGGAAACAGGAGAAAGAGCA
AATTCCTTGATAAATAGGATTCTGACATCCCGGGGTATTCGTGGAGAGCA
AAACACAGTTTCAGCTCCCCCAGATGATGTAGACGTGCAGAGTGGCTCAA
ATGCTGAGGGGGAAGCCCGTTTTCTCCATTCTCTATTAAT
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