CX288505

Overview
NameCX288505
Unique NameCX288505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13314 contig Ccv1_Contig13314:889..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.071e-32
Identity = 77/121 (63.64%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   19 GSMLPVPVDMGAG--IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 375
            G M   P   G    +P  D     P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA   A    +QLASL+L+
Sbjct:  512 GRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.020e-23
Identity = 61/120 (50.83%), Postives = 81/120 (67.50%), Query Frame = 1
Query:   25 MLPVPVDMGAGIPRRDASVGQPMPITA--LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 378
            ++P+P++  A          +P P+T   L++ LA ASP++   +LG+ LYPLVEQ E   AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR  A   A +  D   +LS +E
Sbjct:  549 IIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.692e-21
Identity = 53/97 (54.64%), Postives = 75/97 (77.32%), Query Frame = 1
Query:   25 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 315
            ++P+P+D  + I  + A +   +PI+ L+++LA+ASP  +  +LGE LYPLVE+ E    AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct:  552 IIPLPID-ASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.112e-17
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   13 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 348
            G    +P+   M  G   R  +VGQP P T +      AL+ A P+QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V     + +++ PA
Sbjct:  599 GGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.605e-16
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   37 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 336
            P    AG P  D    QP  +TA   ALA ASPE+Q+ +LGE++YP V   + + A K+TGM+LE+  TE+LHLLE  EAL AKV EA+EVL+   Q  +
Sbjct:  542 PAARPAGRPEAD----QPGALTA--AALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 372
            P+TA S  LA+A P++Q+ +LGE LYPL+ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++    QA   + + A  SL
Sbjct:  541 PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQSL 628          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.099e-16
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 318
            P+   +    P P       P+    V    P+TA  + LA A P++Q+ +LGE L+PL++ +  + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct:  522 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.966e-16
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 PFDMGAGSMLPV-PVDMGAGIPRRDASVGQPMPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 312
            P  +GA   LP   +  G  +P R      P P      A  LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLEMD  E+LHL+ES  AL+ KV EA+ VL
Sbjct:  535 PSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.040e-15
Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  106 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 315
            +++ LANA P++Q+ +LGE LYP++E +  + A K+TGMLLE++ +E+LH++E  EALKAKV EA+ VL+
Sbjct:  556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.040e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 348
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
The following BLAST results are available for this feature:
BLAST of CX288505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PABP2_ARATH6.071e-3263.64Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH3.020e-2350.83Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH3.692e-2154.64Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_EMENI1.112e-1743.10Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA1.605e-1649.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR3.576e-1648.39Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP4_HUMAN6.099e-1640.57Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_CRYNE7.966e-1643.93Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME1.040e-1551.43Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP1_RAT1.040e-1547.06Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC02001B09SK IF1 Citrus clementina cDNA clone C02001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288505 ID=CX288505; Name=CX288505; organism=Citrus clementina; type=EST; length=467bp
CCCTTTGACATGGGTGCTGGCAGTATGCTCCCTGTTCCCGTTGACATGGG
TGCTGGCATACCTCGGCGAGATGCGTCTGTTGGACAACCTATGCCGATAA
CGGCTTTGTCTACTGCTCTTGCAAATGCATCACCAGAACAGCAAAGGACG
CTGCTGGGTGAAAGTTTATATCCTCTAGTGGAGCAGCTGGAGCGAGATGC
AGCGGCTAAGGTAACGGGAATGCTCTTGGAGATGGACCAGACAGAGGTTT
TGCATCTTCTTGAGTCACCAGAGGCTTTGAAGGCGAAAGTAGCTGAGGCA
ATGGAGGTTTTGAGGAGTGTTGCTCAGCAGCAGGCTAATAATCCAGCAGA
TCAACTGGCTTCATTGTCCCTGAATGAAAACCTTGTTTCTTGAGCGCGTT
GCTGTCATTGAAGAAGTTTGGATTAGTTGTGGTTTCAAACAATTAAAGTC
TTTGTTTTTGGCATGGA
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