CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_SOLTU (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.401e-23
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKK+NRR+DL
Sbjct:  158 GYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKDL 207          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_BRAOL (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.603e-22
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+NRR+D  +
Sbjct:  160 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLH 211          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_ARATH (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.603e-22
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+NRR+D  +
Sbjct:  163 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLH 214          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_RECAM (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana GN=NAD10 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.950e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+ R R   Y
Sbjct:  127 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKRSRKTLY 178          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKK+ R + L
Sbjct:  161 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRL 210          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_NEOSM (NADH-quinone oxidoreductase subunit B OS=Neorickettsia sennetsu (strain Miyayama) GN=nuoB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRD 147
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYG+L LQKK+NR+R+
Sbjct:  115 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:  158 GYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:  158 GYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:  158 GYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:  158 GYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NDUS7_SOLTU9.401e-2394.00NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_BRAOL1.603e-2288.46NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_ARATH1.603e-2288.46NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_RECAM3.950e-2186.54NADH-ubiquinone oxidoreductase 20 kDa subunit OS=R... [more]
NDUS7_BOVIN6.737e-2190.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_NEOSM8.799e-2187.76NADH-quinone oxidoreductase subunit B OS=Neoricket... [more]
NDUS7_PONPY8.799e-2188.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PONAB8.799e-2188.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PANTR8.799e-2188.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_HUMAN8.799e-2188.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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