CX288508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288508 vs. ExPASy Swiss-Prot
Match: Y5195_ARATH (UPF0717 protein At5g11950 OS=Arabidopsis thaliana GN=At5g11950 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.678e-21 Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = -1 Query: 2 QFKNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLVYGGGNRGLSKMVSEAAFIRGSQVLGIIPRVLKPLGSSSDSSTGEELVVSGMQERITEMLNYADAFIFLPGDLATLEALMTLASWAHLHIH 385 +F+ ICV G G + F +AAI+LG + RK+ LVYGGG+ GL ++S + G VLGIIP+ L P+ S + + G+ VV+ M ER M A+AFI LPG T+E L+ + +W+ L IH Sbjct: 8 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGE-TVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIH 134
BLAST of CX288508 vs. ExPASy Swiss-Prot
Match: Y4923_PSEAE (UPF0717 protein PA4923 OS=Pseudomonas aeruginosa GN=PA4923 PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18 Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = -1 Query: 2 KNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLVYGGGNRGLSKMVSEAAFIRGSQVLGIIPRVLKPLGSSSDSSTGEELVVSGMQERITEMLNYADAFIFLPGDLATLEALMTLASWAHLHIH 379 +++CV G + G + EAA+ LGR +A R L LVYGGG GL V++AA G +V+GIIP+ L+ T E VV GM R M ADAFI LPG L TLE L + +W L H Sbjct: 4 RSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEVIGIIPQSLQEAEIGHKGLTRLE-VVDGMHARKARMAELADAFIALPGGLGTLEELFEVWTWGQLGYH 128
BLAST of CX288508 vs. ExPASy Swiss-Prot
Match: FAS6_RHOFA (UPF0717 protein ORF6 in fasciation locus OS=Rhodococcus fascians GN=fas6 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15 Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = -1 Query: 2 TMAATPNRQFKNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLVYGGGNRGLSKMVSEAAFIRGSQVLGIIPRVLKPLGSSSDSSTGEELVVSGMQERITEMLNYADAFIFLPGDLATLEALMTLASWAHLHIH 409 T++A K++ V G G+ ++ + A +GR+IA KL LVYGG GL ++ AA G V+G+IP + ++ E VV M +R M DAFI LPG + T E + +W+HL +H Sbjct: 10 TVSAQARPTPKSVTVFCGAMPGRGTKYGQLAEGMGRAIARSKLRLVYGGARVGLMGTLANAALDSGGTVVGVIPESFTAIPEAAHHGLTELHVVHDMHQRKALMAELGDAFIALPGGVGTAEEFFEVLTWSHLGLH 145
BLAST of CX288508 vs. ExPASy Swiss-Prot
Match: YVDD_BACSU (UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13 Identity = 43/126 (34.13%), Postives = 64/126 (50.79%), Query Frame = -1 Query: 2 KNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLVYGGGNRGLSKMVSEAAFIRGSQVLGIIPRVLKPLGSSSDSSTGEELVVSGMQERITEMLNYADAFIFLPGDLATLEALMTLASWAHLHIH 379 K ICV +G G ++ + A +LG +A + + LVYGG GL +++A G +G++P L G + E + V+GM ER +M AD FI +PG T E L + WA + IH Sbjct: 2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFS-GEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIH 126 The following BLAST results are available for this feature:
BLAST of CX288508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288508 ID=CX288508; Name=CX288508; organism=Citrus clementina; type=EST; length=673bpback to top |