CX288508

Overview
NameCX288508
Unique NameCX288508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288508 vs. ExPASy Swiss-Prot
Match: Y5195_ARATH (UPF0717 protein At5g11950 OS=Arabidopsis thaliana GN=At5g11950 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.678e-21
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = -1
Query:    2 QFKNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLVYGGGNRGLSKMVSEAAFIRGSQVLGIIPRVLKPLGSSSDSSTGEELVVSGMQERITEMLNYADAFIFLPGDLATLEALMTLASWAHLHIH 385
            +F+ ICV  G   G  + F +AAI+LG  +  RK+ LVYGGG+ GL  ++S   +  G  VLGIIP+ L P+  S + + G+  VV+ M ER   M   A+AFI LPG   T+E L+ + +W+ L IH
Sbjct:    8 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGE-TVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIH 134          
BLAST of CX288508 vs. ExPASy Swiss-Prot
Match: Y4923_PSEAE (UPF0717 protein PA4923 OS=Pseudomonas aeruginosa GN=PA4923 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = -1
Query:    2 KNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLVYGGGNRGLSKMVSEAAFIRGSQVLGIIPRVLKPLGSSSDSSTGEELVVSGMQERITEMLNYADAFIFLPGDLATLEALMTLASWAHLHIH 379
            +++CV  G + G    + EAA+ LGR +A R L LVYGGG  GL   V++AA   G +V+GIIP+ L+         T  E VV GM  R   M   ADAFI LPG L TLE L  + +W  L  H
Sbjct:    4 RSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEVIGIIPQSLQEAEIGHKGLTRLE-VVDGMHARKARMAELADAFIALPGGLGTLEELFEVWTWGQLGYH 128          
BLAST of CX288508 vs. ExPASy Swiss-Prot
Match: FAS6_RHOFA (UPF0717 protein ORF6 in fasciation locus OS=Rhodococcus fascians GN=fas6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = -1
Query:    2 TMAATPNRQFKNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLVYGGGNRGLSKMVSEAAFIRGSQVLGIIPRVLKPLGSSSDSSTGEELVVSGMQERITEMLNYADAFIFLPGDLATLEALMTLASWAHLHIH 409
            T++A      K++ V  G   G+  ++ + A  +GR+IA  KL LVYGG   GL   ++ AA   G  V+G+IP     +  ++     E  VV  M +R   M    DAFI LPG + T E    + +W+HL +H
Sbjct:   10 TVSAQARPTPKSVTVFCGAMPGRGTKYGQLAEGMGRAIARSKLRLVYGGARVGLMGTLANAALDSGGTVVGVIPESFTAIPEAAHHGLTELHVVHDMHQRKALMAELGDAFIALPGGVGTAEEFFEVLTWSHLGLH 145          
BLAST of CX288508 vs. ExPASy Swiss-Prot
Match: YVDD_BACSU (UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 43/126 (34.13%), Postives = 64/126 (50.79%), Query Frame = -1
Query:    2 KNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLVYGGGNRGLSKMVSEAAFIRGSQVLGIIPRVLKPLGSSSDSSTGEELVVSGMQERITEMLNYADAFIFLPGDLATLEALMTLASWAHLHIH 379
            K ICV +G   G ++ +   A +LG  +A + + LVYGG   GL   +++A    G   +G++P  L   G     +  E + V+GM ER  +M   AD FI +PG   T E L  +  WA + IH
Sbjct:    2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFS-GEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIH 126          
The following BLAST results are available for this feature:
BLAST of CX288508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y5195_ARATH1.678e-2142.19UPF0717 protein At5g11950 OS=Arabidopsis thaliana ... [more]
Y4923_PSEAE1.736e-1843.65UPF0717 protein PA4923 OS=Pseudomonas aeruginosa G... [more]
FAS6_RHOFA8.918e-1533.82UPF0717 protein ORF6 in fasciation locus OS=Rhodoc... [more]
YVDD_BACSU4.894e-1334.13UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD ... [more]
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Properties
Property NameValue
Genbank descriptionC02001B12SK IF1 Citrus clementina cDNA clone C02001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288508 ID=CX288508; Name=CX288508; organism=Citrus clementina; type=EST; length=673bp
GGTGGATGTGCAGATGGGCCCAAGATGCTAGTGTCATAAGTGCCTCTAGT
GTTGCAAGATCTCCTGGAAGGAAAATAAAAGCATCAGCATAATTAAGCAT
TTCAGTTATTCTTTCTTGCATACCTGAGACAACTAACTCTTCTCCAGTTG
ATGAGTCAGACGAACTGCCCAATGGTTTTAGGACTCTTGGGATGATGCCT
AACACTTGACTTCCTCTGATAAAAGCTGCTTCTGAGACCATTTTTGATAA
CCCTCGATTACCTCCTCCATACACCAAGTGTAATTTTCTCGCTGCTATGC
TTCGACCAAGATCTATGGCTGCCTCAACGAACTCTTTATGTTTGCCATAG
GTAAATCCAGAAAGCACACAAATGTTCTTGAATTGTCTATTGGGAGTAGC
TGCCATTGTGATACTTCTCGAAAACAATTTGTGAGTGCTTGACAAAAAAG
AAATCACATTTAAGAGTCTTGGTGATAGTGGGTCATGGTTGTGTATGAGG
TAATATGTCAGTGTCAAATAACGCGTAAAGCACGTGGCTCGCAAGTCAAA
AAGAAAACAGTAAAAAGAAAAAAGCAAACAGTAATAAAATTATTAAAGAC
AATAATGCAAACAATAAGACAATAGTGAAATAAAATAACAATAAAGTAAA
AAGATATTTACAGGTAGTTGCGA
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