CX290862

Overview
NameCX290862
Unique NameCX290862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290862 vs. ExPASy Swiss-Prot
Match: Y3725_ARATH (GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana GN=At3g49725 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 82/167 (49.10%), Postives = 94/167 (56.29%), Query Frame = 3
Query:    3 GRLTFGETGEAEVVXXXXXXXXXXXXXXXXX---ETXXXXXXXXXXXXXXXXXXQIEEVXXXXXXXXXXXXXHGGSDGRGLATVAVVGYTNAGKSTLVGALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHV 494
            GR TFG+ GEAEVV                    ET                  QI+E                G +G    T+AVVGYTNAGKSTL+ AL+ + L+ + RLFATLDP LKS  LPSG  VLLSDTVGFISDLP+QLV AF +TLEEVVEADLL+HV
Sbjct:  265 GRHTFGQFGEAEVVSARGRAGSKGTGGGFVGGAGETELQLQRRRISDRRIRLLSQIKEAQRTRLLQRAGRKKRVGLEGESSGTIAVVGYTNAGKSTLISALTKTALYCNERLFATLDPTLKSAHLPSGNFVLLSDTVGFISDLPIQLVKAFQSTLEEVVEADLLLHV 431          
BLAST of CX290862 vs. ExPASy Swiss-Prot
Match: YNBA_BACSU (Putative GTP-binding protein ynbA OS=Bacillus subtilis GN=ynbA PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.333e-22
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 3
Query:  231 GLATVAVVGYTNAGKSTLVGALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHV 494
            G+  +A+VGYTNAGKST    L+ +D + +  LFATLDP  + +VLPSG  VLLSDTVGFI DLP  L+ AF +TLEEV EADL++H+
Sbjct:  199 GVLQIALVGYTNAGKSTWFNRLTSADSYEEDLLFATLDPMTRKMVLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHL 286          
BLAST of CX290862 vs. ExPASy Swiss-Prot
Match: HFLX_ECOLI (GTP-binding protein hflX OS=Escherichia coli (strain K12) GN=hflX PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 43/85 (50.59%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  240 TVAVVGYTNAGKSTLVGALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHV 494
            TV++VGYTNAGKSTL   ++++ +++  +LFATLDP L+ + +    + +L+DTVGFI  LP  LV AF ATL+E  +A LL+HV
Sbjct:  199 TVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHV 283          
BLAST of CX290862 vs. ExPASy Swiss-Prot
Match: GTPB6_XENLA (Putative GTP-binding protein 6 OS=Xenopus laevis GN=gtpbp6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  228 RGLATVAVVGYTNAGKSTLVGALS-DSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHV 494
            R    ++++GYTN+GK+TL+ AL+ D  L    +LFATLD    + +LP    V+  DT+GF+S LP  L+++F ATLE+VV +DLL+HV
Sbjct:  303 REFPIISILGYTNSGKTTLIKALTGDEGLQPRDQLFATLDVTSHAGLLPCHMPVIYVDTIGFLSQLPHNLIESFSATLEDVVHSDLLIHV 392          
BLAST of CX290862 vs. ExPASy Swiss-Prot
Match: GTPB6_HUMAN (Putative GTP-binding protein 6 OS=Homo sapiens GN=GTPBP6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  228 RGLATVAVVGYTNAGKSTLVGALS-DSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHV 494
            R    ++VVGYTN GK+TL+ AL+ D+ +    +LFATLD    +  LPS   VL  DT+GF+S LP  L+++F ATLE+V  +DL++HV
Sbjct:  179 REFPVISVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQLPHGLIESFSATLEDVAHSDLILHV 268          
BLAST of CX290862 vs. ExPASy Swiss-Prot
Match: GTPB6_MOUSE (Putative GTP-binding protein 6 OS=Mus musculus GN=Gtpbp6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.999e-15
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  228 RGLATVAVVGYTNAGKSTLVGALS-DSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHV 494
            R    V+VVGYTN GK+TL+ AL+ ++ L    + FATLD  + + +LPS  ++L  DT+GF+S LP  L+ AF ATLE+V  +D+LVHV
Sbjct:  282 REFPVVSVVGYTNCGKTTLIQALTGEAALQPRDQPFATLDVTVHAGLLPSRLRILYVDTIGFLSQLPHNLIHAFSATLEDVAYSDVLVHV 371          
BLAST of CX290862 vs. ExPASy Swiss-Prot
Match: Y1126_METJA (Uncharacterized GTP-binding protein MJ1126 OS=Methanocaldococcus jannaschii GN=MJ1126 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 36/85 (42.35%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  240 TVAVVGYTNAGKSTLVGALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHV 494
            TV ++GYTNAGK++L+ AL+  +  S  ++F TL    +++     RK+L++DTVGFI DLP  +++AF +T+EE  ++DL++ V
Sbjct:  182 TVGLIGYTNAGKTSLLNALTGENKESKNQVFTTLTTTTRAIK-GIKRKILVTDTVGFIDDLPPFMIEAFLSTIEESADSDLILIV 265          
The following BLAST results are available for this feature:
BLAST of CX290862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y3725_ARATH4.572e-3149.10GTP-binding protein At3g49725, chloroplastic OS=Ar... [more]
YNBA_BACSU1.333e-2259.09Putative GTP-binding protein ynbA OS=Bacillus subt... [more]
HFLX_ECOLI2.436e-1650.59GTP-binding protein hflX OS=Escherichia coli (stra... [more]
GTPB6_XENLA2.693e-1546.67Putative GTP-binding protein 6 OS=Xenopus laevis G... [more]
GTPB6_HUMAN3.517e-1547.78Putative GTP-binding protein 6 OS=Homo sapiens GN=... [more]
GTPB6_MOUSE5.999e-1548.89Putative GTP-binding protein 6 OS=Mus musculus GN=... [more]
Y1126_METJA4.754e-1242.35Uncharacterized GTP-binding protein MJ1126 OS=Meth... [more]
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Properties
Property NameValue
Genbank descriptionC03001A05Rv OF1 Citrus clementina cDNA clone C03001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290862 ID=CX290862; Name=CX290862; organism=Citrus clementina; type=EST; length=494bp
ATGGCCGCCTGACTTTTGGGGAAACTGGTGAAGCTGAAGTTGTTAGTGCC
CGAGGGAGAGGAAGTGGGGGACGTGGTTTCATCAGTGGTGCTGGAGAAAC
TGAACTTCAACTTCAACGGCGAAGAATTTTAGAACGGCGGAGTCATTTGT
TATCCCAAATTGAAGAGGTTCGTCGTACTCGAGCTGTGCAACGGGCTGCT
CGTAGGAGACATGGTGGATCAGATGGTCGTGGTTTAGCCACTGTTGCTGT
TGTAGGGTACACAAATGCTGGAAAATCTACATTAGTTGGTGCGCTCTCTG
ATAGTGATCTATTTAGTGATGCACGCTTGTTTGCGACATTGGATCCTAGA
TTAAAGAGTGTCGTTCTCCCTTCCGGAAGAAAAGTGCTTCTTAGTGATAC
AGTGGGATTTATATCAGATTTACCTTTGCAGTTGGTGGATGCATTTCATG
CAACATTGGAAGAAGTGGTGGAAGCTGACCTCCTTGTGCATGTA
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