CX290867

Overview
NameCX290867
Unique NameCX290867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14609 contig Ccv1_Contig14609:1065..1687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_ZINEL (Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.612e-39
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            IEHV GDMF+SVPKGDAIFMK +LHDW+D HCL++LKNCYKS+PE+GKVIV E +LPE P+T+  +++  H+DV+M+  +PGGKERT  EF  LA GAGF G +      N WVMEF K
Sbjct:  236 IEHVGGDMFESVPKGDAIFMKWILHDWSDAHCLQVLKNCYKSLPENGKVIVAECILPEAPDTTPATQNVIHIDVIMLAHNPGGKERTEKEFEALAKGAGFKGFNKAACALNTWVMEFCK 354          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.618e-36
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            +EHV GDMF SVPKGDAIFMK + HDW+DEHCLK LKNCY ++P++GKVI+ E +LP  P++S+ +K   H+DV+M+  +PGGKERT  EF  LA GAGF G +   +  N +V+EF K
Sbjct:  245 VEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_CAPAN (Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.877e-36
Identity = 68/119 (57.14%), Postives = 86/119 (72.27%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            +EHV  DMF SVPK DAIFMK + HDW+DEHCLK LKNCY+++P +GKV+V E +LPE P+TS  +K+  H+D++M+  +PGGKERT  EF  LA GAGF G          WVMEF+K
Sbjct:  241 VEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.029e-35
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            +EHV GDMF S+PK DA+FMK + HDW+DEHCLK LKNCY+++P++GKVIV E +LP  P++S+ +K   H+DV+M+  +PGGKERT+ EF  LA GAGF G        N ++MEF K
Sbjct:  245 VEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_CLABR (Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.029e-35
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            +EHV GDMF SVPKGDAIFMK + HDW+DEHCLK LKNCY ++PE GKVIV E +LP  P+ S+ +K   H+D +M+  +PGGKERT  EF  LA GAGF G        N +VMEF K
Sbjct:  250 VEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSPDPSLATKGVIHIDAIMLAHNPGGKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.755e-35
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            +EHV GDMF SVPKGDAIFMK + HDW+D+HC KLLKNCY+++P++GKVI+ E +LPE P+TS+ +++  H+DV+M+  +PGGKERT  EF  LA GAGF       +  N W+ME  K
Sbjct:  232 VEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVHVDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.292e-35
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            ++HV GDMF SVPKGDAIFMK + HDW+DEHCLK LKNCY ++P++GKVI+ E +LP  P+TS+ +K   H+DV+M+  +PGGKERT  EF  LA G+GF GI       N +V+EF K
Sbjct:  245 VQHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDTSLATKGVVHIDVVMLAHNPGGKERTEQEFEALAKGSGFQGIRVACNAFNTYVIEFLK 363          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_OCIBA (Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.292e-35
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            +EHV GDMF SVPKGDAIFMK + HDW+DEHC+K LKNCY ++P++GKVI+ E +LPE P+T + +K+  H+DV+M+  +PGGKERT  EF  LA  AGF   +      N W+ME  K
Sbjct:  243 VEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.292e-35
Identity = 65/119 (54.62%), Postives = 88/119 (73.95%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            ++HV GDMF SVPKGDAIFMK + HDW+D HCLK LKNC++++PE+GKVI+ E +LPE P++++ +++  H+DV+M+  +PGGKERT  EF  LA GAGF G        N W+ME  K
Sbjct:  245 VDHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKVILAECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCAYNSWIMELLK 363          
BLAST of CX290867 vs. ExPASy Swiss-Prot
Match: OMT2_CHRAE (Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 69/119 (57.98%), Postives = 87/119 (73.11%), Query Frame = 3
Query:    6 IEHVRGDMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 362
            IEHV GDMF SVPKGDAIFMK + HDW+DEHCLKLLKNCY ++P +GKVI+ E +LPEVP++S+ +K   H+DV+ +  +PGGKERT  EF  LA  AGF G        N +++EF K
Sbjct:  221 IEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNGKVILAECILPEVPDSSLATKGVVHIDVITVAHNPGGKERTEKEFEALAKAAGFQGFQVFCNAFNTYIIEFSK 339          
The following BLAST results are available for this feature:
BLAST of CX290867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
COMT1_ZINEL7.612e-3962.18Caffeic acid 3-O-methyltransferase OS=Zinnia elega... [more]
COMT1_PRUDU4.618e-3657.14Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT1_CAPAN7.877e-3657.14Caffeic acid 3-O-methyltransferase OS=Capsicum ann... [more]
COMT1_MEDSA1.029e-3555.46Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]
COMT1_CLABR1.029e-3558.82Caffeic acid 3-O-methyltransferase OS=Clarkia brew... [more]
COMT1_COFCA1.755e-3556.30Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]
COMT1_ROSCH2.292e-3557.14Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]
COMT1_OCIBA2.292e-3555.46Caffeic acid 3-O-methyltransferase 1 OS=Ocimum bas... [more]
COMT1_CATRO2.292e-3554.62Caffeic acid 3-O-methyltransferase OS=Catharanthus... [more]
OMT2_CHRAE2.993e-3557.98Quercetin 3-O-methyltransferase 2 OS=Chrysospleniu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03001B01Rv OF1 Citrus clementina cDNA clone C03001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290867 ID=CX290867; Name=CX290867; organism=Citrus clementina; type=EST; length=623bp
CACGTATTGAGCATGTACGGGGTGATATGTTCCAAAGTGTTCCAAAAGGT
GATGCCATTTTTATGAAGTCGGTACTGCACGATTGGAATGATGAACATTG
CTTGAAGTTGTTGAAGAATTGCTACAAAAGCATCCCAGAAGATGGAAAGG
TAATCGTTGTGGAGTCAATGCTTCCAGAAGTTCCTAATACAAGCATTGAA
TCAAAATCAAATTCCCATTTGGACGTGCTTATGATGATTCAAAGTCCCGG
TGGAAAGGAGAGAACAAGGCATGAATTCATGACCCTGGCTACTGGCGCTG
GTTTTGGTGGGATCAGTTGTGAACTTGCTATTGGTAATCTCTGGGTTATG
GAGTTCTATAAGTAGAGTGCATGCCCATGCATCCTAGAAATAAAGCAAAT
CTTGTGTTGATTGTCTTGCGTGTATCTCTTTCCAAGCATGCTGATATGTC
TCCCAAAGACGAGCAAGAACCCATGCATTTGACAAACTTCCCAGGTACCT
GATAGCCATGCTTGAGAGGAGGAGTCTAGGACTTAATAATAAGTGCTTTG
AAATAAATGGGTGCTTGACACGTGGTCTATCAACTATTTGTGCAATATTG
TTACCCATATTTCCTATTATTTC
back to top