CX290880

Overview
NameCX290880
Unique NameCX290880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.795e-34
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+PLIVYC+LPA CLLTGKFIVPEISNYA ++F+ +FISIA TGILEMQWGGVGIDDWWRNEQ WVIGGASSH F    G
Sbjct:  866 TSLPLIVYCSLPAVCLLTGKFIVPEISNYAGILFMLMFISIAVTGILEMQWGGVGIDDWWRNEQFWVIGGASSHLFALFQG 946          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.270e-33
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+PLIVYC+LPA CLLTGKFIVPEISNYAS++F+ LF SIA TGILEMQWG VGIDDWWRNEQ WVIGG S+H F    G
Sbjct:  867 TSLPLIVYCSLPAICLLTGKFIVPEISNYASILFMALFSSIAITGILEMQWGKVGIDDWWRNEQFWVIGGVSAHLFALFQG 947          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 6.883e-33
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+VYC+LPA CLLTGKFIVPEISNYAS++F+ LF SIA TGILEMQWG VGIDDWWRNEQ WVIGG S+H F    G
Sbjct:  852 TSIPLLVYCSLPAICLLTGKFIVPEISNYASILFMALFGSIAVTGILEMQWGKVGIDDWWRNEQFWVIGGVSAHLFALFQG 932          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.003e-32
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TS+PL+VYC+LPA CLLTGKFIVPEISNYA ++F+ +F+SIA TGILEMQWG +GIDDWWRNEQ WVIGG SSH F    G
Sbjct:  870 TSLPLLVYCSLPAICLLTGKFIVPEISNYAGILFLLMFMSIAVTGILEMQWGKIGIDDWWRNEQFWVIGGVSSHLFALFQG 950          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.611e-32
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL++YC LPA CLLTGKFI+PEISN+AS+ FI LFISI ATGILEM+W GVGID+WWRNEQ WVIGG S+H F    G
Sbjct:  863 TSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQG 943          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.892e-31
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL++YC LPA CLLTGKFI+PEISN+AS+ FI LF+SI ATGILEM+W GVGID+WWRNEQ WVIGG S+H F    G
Sbjct:  855 TSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQG 935          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.892e-31
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL++YC LPA CLLTGKFI+PEISN+AS+ FI LF+SI ATGILEM+W GVGID+WWRNEQ WVIGG S+H F    G
Sbjct:  855 TSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQG 935          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.443e-31
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+ YCTLPA CLLTGKFI PE++N ASL F+ LFI I ATGILEM+W GVGIDDWWRNEQ WVIGG SSH F    G
Sbjct:  874 TSIPLLAYCTLPAICLLTGKFITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQG 954          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.443e-31
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+ YCTLPA CLLTGKFI PE++N ASL F+ LFI I ATGILEM+W GVGIDDWWRNEQ WVIGG SSH F    G
Sbjct:  874 TSIPLLAYCTLPAICLLTGKFITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQG 954          
BLAST of CX290880 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.443e-31
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 TSIPLIVYCTLPAFCLLTGKFIVPEISNYASLVFIGLFISIAATGILEMQWGGVGIDDWWRNEQLWVIGGASSHFFCSLPG 244
            TSIPL+ YCTLPA CLLTGKFI PE++N ASL F+ LFI I ATGILEM+W GVGIDDWWRNEQ WVIGG SSH F    G
Sbjct:  875 TSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFALFQG 955          
The following BLAST results are available for this feature:
BLAST of CX290880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CESA2_ARATH2.795e-3480.25Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA6_ARATH5.270e-3377.78Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA5_ARATH6.883e-3377.78Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA9_ARATH2.003e-3274.07Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA8_ORYSJ7.611e-3274.07Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA2_ORYSJ2.892e-3172.84Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI2.892e-3172.84Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA5_ORYSJ6.443e-3174.07Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI6.443e-3174.07Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ORYSJ6.443e-3174.07Probable cellulose synthase A catalytic subunit 3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03001C04Rv OF1 Citrus clementina cDNA clone C03001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290880 ID=CX290880; Name=CX290880; organism=Citrus clementina; type=EST; length=251bp
GACCTCCATTCCTTTGATTGTTTACTGTACGCTACCTGCCTTCTGCCTTC
TCACTGGGAAATTCATTGTTCCTGAGATTAGCAACTATGCTAGTCTCGTC
TTTATTGGTCTCTTCATATCTATTGCTGCAACTGGTATCCTTGAGATGCA
GTGGGGTGGTGTTGGCATAGATGATTGGTGGAGAAACGAGCAGCTCTGGG
TGATTGGAGGTGCTTCCTCGCACTTTTTTTGCTCTCTTCCAGGGCCTACT
A
back to top