CX290882

Overview
NameCX290882
Unique NameCX290882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length333
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.449e-46
Identity = 86/110 (78.18%), Postives = 99/110 (90.00%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            FHPL QFFYFDSVESLPT PL+  + KP N+RYDAQ+SVFG+KLQKK+E+A  F+VGSGALGCEFLKN+ALMGVSC ++GKLTIT DD+I +SNLSRQFLFRDWNIGQAK
Sbjct:  416 FHPLNQFFYFDSVESLPTYPLEPQDLKPSNNRYDAQVSVFGSKLQKKMEEANTFVVGSGALGCEFLKNLALMGVSCSSKGKLTITDDDIIEKSNLSRQFLFRDWNIGQAK 525          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.893e-46
Identity = 86/110 (78.18%), Postives = 97/110 (88.18%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            FHPLYQFFYFDSVESLP +PL+  + KP NSRYDAQISVFG+KLQ KLE+AK+F+VGSGALGCEFLKN+ALMG+SC   G LT+T DDVI +SNLSRQFLFRDWNIGQ K
Sbjct:  413 FHPLYQFFYFDSVESLPVDPLEPGDLKPKNSRYDAQISVFGSKLQNKLEEAKIFMVGSGALGCEFLKNLALMGISCSQNGNLTLTDDDVIEKSNLSRQFLFRDWNIGQPK 522          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.193e-46
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            FHPLYQFFYFDSVESLP +PL+  + KP NSRYDAQISVFG+ LQ KLE+AK+F+VGSGALGCEFLKN+ALMG+SC   G LT+T DDVI +SNLSRQFLFRDWNIGQ K
Sbjct:  413 FHPLYQFFYFDSVESLPVDPLEPGDLKPKNSRYDAQISVFGSTLQNKLEEAKIFMVGSGALGCEFLKNLALMGISCSQNGNLTVTDDDVIEKSNLSRQFLFRDWNIGQPK 522          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.966e-28
Identity = 61/113 (53.98%), Postives = 82/113 (72.57%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTE---PLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F PL QF YFDS+ESLP     P +    +P+NSRYD QI+VFG   QKK+ ++KVF+VGSGA+GCE LKN AL+G+  G+ G + +T +D I +SNL+RQFLFR  ++G+ K
Sbjct:  382 FTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNK 494          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.276e-26
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEF-KPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F+PL Q+FYFDS+ESLP+    S E  KP   RYD QI+VFG++ Q+K+     F+VG+GA+GCE LKN A+MGV+ G  G +++T  D I +SNL+RQFLFR  ++G+ K
Sbjct:  377 FYPLKQYFYFDSLESLPSSVTISEETCKPRGCRYDGQIAVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLK 487          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.842e-26
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFK--PINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F P+ Q+ YFD++E LP +    TE K  P  +RYD Q++VFG+ LQ+KL   K F+VG+GA+GCE LKN A++G+ CG  G++ +T  D I +SNL+RQFLFR W++ + K
Sbjct:  417 FMPIMQWLYFDALECLPEDKESLTEDKCLPRQNRYDGQVAVFGSDLQEKLGRQKYFLVGAGAIGCELLKNFAMIGLGCGENGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLK 528          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.842e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFK--PINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F P+ Q+ YFD++E LP   +   E K  P  +RYD Q++VFG+ LQ+KL   K F+VG+GA+GCE LKN A++G+ CG  G++T+T  D I +SNL+RQFLFR W+I + K
Sbjct:  416 FMPIRQWLYFDALECLPEHRVAFMEDKCLPHQNRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEDGEITVTDMDTIEKSNLNRQFLFRPWDITKLK 527          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.331e-26
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFK--PINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F P+ Q+ YFD++E LP +    TE K  P  +RYD Q++VFG+ LQ+KL   K F+VG+GA+GCE LKN A++G+ CG  G++ +T  D I +SNL+RQFLFR W++ + K
Sbjct:  417 FMPIMQWLYFDALECLPEDKEALTEDKCLPRQNRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSNLNRQFLFRPWDVTKLK 528          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.331e-26
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPT--EPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F P++Q  +FDSVE LP   E L   EF+PI SRYD QI  FG  LQ K+E+   F+VG+GA+GCE LKN A+MG+  G +G + +T  D I +SNL+RQFLFR  +I Q K
Sbjct:  377 FTPIHQLAFFDSVECLPEDLETLPEEEFQPIGSRYDGQIITFGKTLQNKIENLNYFLVGAGAIGCEMLKNFAMMGLGAGPKGLVHVTDMDTIEKSNLNRQFLFRSSDIQQLK 488          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.080e-25
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFK--PINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F P+ Q+ YFD++E LP +    TE K  P  +RYD Q++VFG+  Q+KL   K F+VG+GA+GCE LKN A++G+ CG  G++ +T  D I +SNL+RQFLFR W++ + K
Sbjct:  417 FMPIMQWLYFDALECLPEDKEALTEEKCLPRQNRYDGQVAVFGSDFQEKLSKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSNLNRQFLFRPWDVTKLK 528          
The following BLAST results are available for this feature:
BLAST of CX290882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBE13_WHEAT1.449e-4678.18Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBE11_WHEAT1.893e-4678.18Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE12_WHEAT7.193e-4677.27Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBA1_YEAST3.966e-2853.98Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]
UBA1_SCHPO1.276e-2652.25Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1_RABIT2.842e-2649.11Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1Y_MOUSE2.842e-2650.00Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA1_RAT6.331e-2649.11Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_DICDI6.331e-2652.68Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA1_MOUSE1.080e-2548.21Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC03001C06Rv OF1 Citrus clementina cDNA clone C03001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290882 ID=CX290882; Name=CX290882; organism=Citrus clementina; type=EST; length=333bp
GTTCCATCCTCTTTATCAGTTCTTCTATTTTGATTCTGTGGAGTCACTTC
CTACCGAGCCTCTGGATTCCACTGAATTTAAACCAATTAATAGCCGCTAT
GATGCACAAATTTCTGTGTTTGGGGCCAAGCTCCAGAAGAAGCTGGAGGA
TGCTAAAGTGTTCATTGTAGGATCTGGTGCACTTGGGTGTGAGTTCTTAA
AGAATGTGGCGCTGATGGGAGTTTCATGTGGTAATCAAGGAAAACTAACT
ATTACTGCTGATGATGTAATTGCACAGAGTAACCTTAGTAGGCAGTTCCT
CTTCCGTGACTGGAATATTGGGCAGGCCAAATC
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