CX290883

Overview
NameCX290883
Unique NameCX290883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig329 contig Ccv1_Contig329:1..421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 7.805e-61
Identity = 113/121 (93.39%), Postives = 117/121 (96.69%), Query Frame = 1
Query:   58 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQP IAGL D+DKPFICTMDS
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDS 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.472e-59
Identity = 111/121 (91.74%), Postives = 116/121 (95.87%), Query Frame = 1
Query:   58 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD LFIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGP+ CQP IAGL D++KPFICTMDS
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDS 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.246e-58
Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = 1
Query:   58 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMDS 420
            EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRI KIHD+L++GLSGLATD QTLYQR  FRHKLYQLREER+M+PETFASLVSALLYEKRFGPYFCQP IAGL ++DKPFICTMDS
Sbjct:    5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDS 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.627e-58
Identity = 106/120 (88.33%), Postives = 117/120 (97.50%), Query Frame = 1
Query:   58 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDKPFICTMD 417
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQT+ATDFQR+ KIHD+L+IGLSGLATD+QTLYQRLVFRHKLYQLREERDMKP+TFASLVSALLYEKRFGPYFCQP IAGL ++++PFICTMD
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMD 124          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.168e-38
Identity = 73/120 (60.83%), Postives = 92/120 (76.67%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDEDK-PFICTMD 417
            YNG A + MVGKNC AIASD R G+Q QTI+ DF ++ +I+D+ F+G+SGL TD+QTLYQ+LVFRH LY+LREERDM P   ++L++ +LYEKRFGPYF +P I GL   D  PFI  MD
Sbjct:    6 YNGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPFISGMD 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.987e-36
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDED-KPFICTMD 417
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +P IAGL  +  KPFIC++D
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.987e-36
Identity = 73/120 (60.83%), Postives = 94/120 (78.33%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDED-KPFICTMD 417
            YNG A++AM GK C AIA+DRR GVQ Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP+TF S+VS LLYE+RFGPY+ +P IAGL  +  +PFIC++D
Sbjct:    6 YNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLD 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.987e-36
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDED-KPFICTMD 417
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +P IAGL  +  KPFIC++D
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 2.987e-36
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDED-KPFICTMD 417
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +P IAGL  +  KPFIC++D
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125          
BLAST of CX290883 vs. ExPASy Swiss-Prot
Match: PSB3_BOVIN (Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 2.987e-36
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   61 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPAIAGLSDED-KPFICTMD 417
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +P IAGL  +  KPFIC++D
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125          
The following BLAST results are available for this feature:
BLAST of CX290883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSB3A_ARATH7.805e-6193.39Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3B_ARATH1.472e-5991.74Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSB3_PICMA1.246e-5889.26Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3_ORYSJ1.627e-5888.33Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_DICDI4.168e-3860.83Proteasome subunit beta type-3 OS=Dictyostelium di... [more]
PSB3_RAT2.987e-3660.83Proteasome subunit beta type-3 OS=Rattus norvegicu... [more]
PSB3_ONCMY2.987e-3660.83Proteasome subunit beta type-3 OS=Oncorhynchus myk... [more]
PSB3_MOUSE2.987e-3660.83Proteasome subunit beta type-3 OS=Mus musculus GN=... [more]
PSB3_HUMAN2.987e-3660.83Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
PSB3_BOVIN2.987e-3660.83Proteasome subunit beta type-3 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionC03001C07Rv OF1 Citrus clementina cDNA clone C03001C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290883 ID=CX290883; Name=CX290883; organism=Citrus clementina; type=EST; length=421bp
CCCAACTGAACTGAACTCGCATCAAGTCACTCTACAACTATAATTATGTC
TATCACTGAGTACAATGGGAGCGCACTCGTTGCGATGGTCGGAAAGAACT
GCTTTGCCATTGCCAGCGATCGGCGCCTCGGCGTTCAGCTTCAGACAATA
GCCACTGATTTTCAGCGAATTTCCAAAATTCACGATCGCCTTTTTATCGG
CCTCTCTGGACTCGCCACTGATTCCCAGACCTTGTATCAAAGGCTGGTGT
TTCGTCACAAATTGTATCAGCTGCGAGAGGAAAGGGACATGAAGCCTGAA
ACTTTTGCTAGCTTAGTCTCTGCTTTGCTTTATGAGAAAAGGTTTGGCCC
TTACTTCTGTCAACCTGCTATTGCTGGATTGAGTGATGAAGACAAGCCCT
TTATCTGCACAATGGACTCAA
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