CX291029

Overview
NameCX291029
Unique NameCX291029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length603
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7301 contig Ccv1_Contig7301:332..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291029 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:  217 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKK 579
            ++R LAK N++ RV +A  GAIP L G+L    +  Q  S+ ALLNL I  + NK AIV AGA+  ++++++     +    E   A    LS +D NK  IG+ GA+P LV  L    ++
Sbjct:  375 EIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICEN-NKGAIVSAGAIPGIVQVLKK---GSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQR 491
[Close]
BLAST of CX291029 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 1 
Query:  217 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQD 603
            ++RSL+K +++ R+ +A  GAIP L  +L  +   +Q +++  +LNL I  + NK  I+ AGAV  +++++    A      E   A    LS  D NK IIG SGA+P LV  L+N     +P+ K+D
Sbjct:  354 EIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYEN-NKELIMFAGAVTSIVQVLR---AGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENG----TPRGKKD 474
[Close]
BLAST of CX291029 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1 
Query:  217 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKK 579
            ++R LAK N + RV +A  GAIP L  +L      +Q  S+ ALLNL I N+ NK AIV AGA+  +++++++    +    E   A    LS +D NK  IG++GA+  L+  L+   ++
Sbjct:  368 ELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSI-NEGNKGAIVDAGAITDIVEVLKN---GSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRR 484
The following BLAST results are available for this feature:
BLAST of CX291029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB13_ARATH5.778e-1238.02U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB11_ARATH5.778e-1235.66U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB14_ARATH2.867e-1136.36U-box domain-containing protein 14 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC03003B04SK OF2 Citrus clementina cDNA clone C03003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291029 ID=CX291029; Name=CX291029; organism=Citrus clementina; type=EST; length=603bp
GTGGACTCGGAGAAAGGAAACGGGCGGAAGCCAGAGAAGCAGAAAGAAGC
AAAAGGGTGCGTTTCGAAATCGGAGAAGCTGTTGGATCTCTTGAACTTGG
CTGAGGGTGAAGCTGCGAGTGAGATAAAGAAGAAAGAGGAAGCTTTGGAG
GAGTTAAAGATTGTTGTTAAGGATTTGCAAAGTGAGAGTGAAGAGCAAAG
AAGAGAAGCTGCGAGTAAAGTGAGGAGTTTGGCTAAAGAAAATTCTGAAA
CAAGGGTCACTCTTGCTATGCTAGGTGCCATTCCTCCTTTGGCTGGGATG
CTTGATTTTCAACTTGCTGATTCTCAAATTTCTTCTCTTTATGCTCTTCT
CAATCTTGGAATCGGCAATGATTTGAACAAAGCAGCCATTGTGAAAGCAG
GTGCTGTTCACAAGATGCTAAAGCTTATAGAATCTCCTGTTGCTCCTAAC
CCATCAGTTTCAGAAGCAATAGTAGCGAATTTCTTAGGCTTGAGTGCGTT
GGACTCTAATAAACCTATCATTGGATCTTCAGGTGCAGTCCCATTCTTGG
TTAAAACCCTCAAGAATTCGGATAAAAAAGTTAGTCCACAAGCAAAACAA
GAT
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