CX291031

Overview
NameCX291031
Unique NameCX291031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3434 contig Ccv1_Contig3434:118..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291031 vs. ExPASy Swiss-Prot
Match: YBDL_ECOLI (Aminotransferase ybdL OS=Escherichia coli (strain K12) GN=ybdL PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 3 
Query:  219 LEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG 482
            L +  TTIFTQMS LA +H AINL QGFP+FDGP ++++     +  G NQYA   GV     AIA + ++  G + D + ++TVT+G
Sbjct:   12 LPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAG 99
[Close]
BLAST of CX291031 vs. ExPASy Swiss-Prot
Match: KAT_DICDI (Kynurenine--oxoglutarate transaminase OS=Dictyostelium discoideum GN=ccbl PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 3 
Query:  210 AKCLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIR-DGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSG 482
            +K    F  +++ + S LAIK+ A+NLGQGFPNF+ P FVKDA I+ I   G NQY R  G      A++S +    G E++   E+ V  G
Sbjct:   17 SKQTSSFGPSVWLEFSPLAIKYNAVNLGQGFPNFEPPKFVKDAMIKTIEVGGFNQYTRSPGHIRLVKALSSVYSPYFGRELNAMTEIMVGVG 108
The following BLAST results are available for this feature:
BLAST of CX291031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YBDL_ECOLI4.347e-1545.45Aminotransferase ybdL OS=Escherichia coli (strain ... [more]
KAT_DICDI3.809e-1141.30Kynurenine--oxoglutarate transaminase OS=Dictyoste... [more]
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Properties
Property NameValue
Genbank descriptionC03003B07SK OF2 Citrus clementina cDNA clone C03003B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291031 ID=CX291031; Name=CX291031; organism=Citrus clementina; type=EST; length=487bp
CCGCCTTCGGGTCTTCTTTTTCTTCCTCAGCTCTGCTTTCGTTTTCGAAG
CATTTGCATACAATAAGCATTACTGATTCTGTCAACACCAGAAGAAGAGG
AATCAGTACCGCTTGCCCTAGGTACCCTTCTCTCATGGCGAGCTTGTCCA
CCGTTTCCACCAATCAAAGCGACACCATCCACAAGACCAATCTTCAGCCT
CAACAGGTTGCTAAGTGCTTGGAGAAGTTTAAAACTACAATCTTTACACA
AATGAGTATGCTTGCCATCAAACATGGAGCTATAAATCTTGGTCAAGGCT
TTCCCAACTTCGATGGCCCAGATTTTGTTAAAGATGCAGCGATTCAAGCC
ATAAGGGATGGGAAGAATCAATATGCTCGTGGACATGGGGTTCCAGAGTT
CAACTCTGCCATTGCTTCCCGGTTTAAGAAAGATTCTGGGCTCGAGGTTG
ACCCTGAAAAGGAAGTTACTGTTACCTCTGGGTGCAC
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