CX291032

Overview
NameCX291032
Unique NameCX291032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig54 contig Ccv1_Contig54:349..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291032 vs. ExPASy Swiss-Prot
Match: Y2179_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 39/117 (33.33%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:   70 YCDKNADYDVKVRGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYF---GWHIHSETH-DLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQELTCITF 408
            YCD N +   K+  + + P P   G+E T S+  + ++ I+ G  + +V++F   GW      H D+C   SCPVS G F  + S  +P FTP G Y  ++ + D + +  +TC+TF
Sbjct:   25 YCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSLNEQITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPHGQYKGQLTLTDQSNR-NVTCLTF 140
The following BLAST results are available for this feature:
BLAST of CX291032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2179_DICDI1.357e-1233.33Putative phosphatidylglycerol/phosphatidylinositol... [more]
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Properties
Property NameValue
Genbank descriptionC03003B08SK OF2 Citrus clementina cDNA clone C03003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291032 ID=CX291032; Name=CX291032; organism=Citrus clementina; type=EST; length=512bp
AAGTTCAAGCTTGCCATTGTGCTATCGCTTTGCTTGATTGTAGATTTGGC
CCGAGCTACCGATGTTAAGTACTGCGATAAGAATGCTGATTATGATGTGA
AGGTTCGTGGAGTTGACATATCCCCTTATCCAGTGGCAAGAGGCAGGGAG
GCTACCTTCAGCATCTCTGCTACTACAGATAAAGCAATCTCCGGAGGAAA
ACTGGTGATTGATGTTTCCTACTTTGGGTGGCACATTCACAGTGAGACAC
ATGATCTTTGTGATGAGACATCCTGCCCTGTGTCAACTGGTGATTTTGTG
GTTGCTCACTCTCAAGTTTTACCTGGATTCACTCCTCCTGGTACCTACTC
TCTGAAGATGAAAATGTATGATGCAACCAAGAAGCAAGAGCTAACATGCA
TTACCTTTGACTTCTCCATTGGATTTGCAAGTTCCGTGGCTGATAGTTAA
GAGCTTTGAAGATGCCTTCGGTTTACCTTTCTGCCATATAAATTTGATGT
AAAGGAAAATAC
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