CX291037

Overview
NameCX291037
Unique NameCX291037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14196 contig Ccv1_Contig14196:545..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 1.993e-68
Identity = 131/179 (73.18%), Postives = 145/179 (81.01%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQ 542
            LEEEIE++GGHLNAYTSREQTTYYAKVLD +VN ALD+LADILQNS F++ RI RERDVILR           V+ DHLHATAFQYTPLGRTILGPAQN+K+IT+E LQNYI THYTA RMVIAA+GA            LFTKLS+DPTT SQLVANEPA FTGSEVR+IDDD+PLAQ
Sbjct:  159 LEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVILREMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRMVIAAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASFTGSEVRMIDDDLPLAQ 337          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.219e-43
Identity = 94/179 (52.51%), Postives = 117/179 (65.36%), Query Frame = 3
Query:    3 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I ++ L +YI THY  PR+V+AA+G              F +  +  T   ++ A  P  FTGSE+R+ DD +PLA
Sbjct:  119 DLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGESLS--THKGEIPALPPCKFTGSEIRVRDDKMPLA 295          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.898e-43
Identity = 91/179 (50.84%), Postives = 117/179 (65.36%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSAD-PTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            LE EIENMG HLNAYTSRE T Y+AK L++DV   +DIL DILQNS  +++ I RERDVILR           V+FDHLHATA+Q+ PLGRTILGP +NI+ IT+  L NYI  +YTA RMV+  +G              F+KL A  P +++ +++ +   F GS++RI DD IP A
Sbjct:  102 LELEIENMGAHLNAYTSRENTVYFAKALNEDVPKCVDILQDILQNSKLEESAIERERDVILRESEEVEKQLEEVVFDHLHATAYQHQPLGRTILGPRENIRDITRTELVNYIKNNYTADRMVLVGAGGVPHEQLVEMADKYFSKLPATAPVSSASILSKKKPDFIGSDIRIRDDTIPTA 280          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.785e-43
Identity = 94/179 (52.51%), Postives = 116/179 (64.80%), Query Frame = 3
Query:    3 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G              F       T   ++ A  P  FTGSE+R+ DD +PLA
Sbjct:  118 DLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLC--THKGEIPALPPCKFTGSEIRVRDDKMPLA 294          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 3.785e-43
Identity = 94/179 (52.51%), Postives = 116/179 (64.80%), Query Frame = 3
Query:    3 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G              F       T   ++ A  P  FTGSE+R+ DD +PLA
Sbjct:  118 DLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLC--THKGEIPALPPCKFTGSEIRVRDDKMPLA 294          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 1.878e-42
Identity = 95/181 (52.49%), Postives = 116/181 (64.09%), Query Frame = 3
Query:    3 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTA--SQLVANEPAIFTGSEVRIIDDDIPLA 539
            DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G              F     D   A    + A  P  FTGSE+R+ DD +PLA
Sbjct:  118 DLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVCHNELLELAKFHF----GDSLCAHKGDVPALPPCKFTGSEIRVRDDKMPLA 294          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.184e-42
Identity = 93/179 (51.96%), Postives = 114/179 (63.69%), Query Frame = 3
Query:    3 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            DLE EIENMG HLNAYTSREQT YYAK   +D+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I ++ L +YI THY  PR+V+AA+G              F         A  + A  P  FTGSE+R+ DD +PLA
Sbjct:  118 DLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVCHNELLELAKFHFGDSLCSHKGA--IPALPPCKFTGSEIRVRDDKMPLA 294          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.712e-41
Identity = 91/180 (50.56%), Postives = 111/180 (61.67%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKL--SADPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            LE E+EN+G HLNAYTSREQT YYAK   KDV  A+DI++DILQNS  +   I RERDVILR           V+FDHLHA AFQ  PLGRTILGP  NI +I ++ L +YI T+YTA RMV+  +G              F+ L  SA+P    +L +     F GSE RI DD++P A
Sbjct:   91 LELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQNSKLESGAIERERDVILREQQEVDKQLEEVVFDHLHAVAFQGQPLGRTILGPKNNILSIQRDDLASYIQTNYTADRMVLVGTGGVDHQSLVKLAEKHFSSLPVSANPLALGRLSSERKPTFVGSEARIRDDELPTA 270          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.253e-38
Identity = 91/178 (51.12%), Postives = 108/178 (60.67%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLA 539
            LE EIENMGGHLNAYTSREQT YYAK+  +DV   ++IL DILQNST D   I RER VILR           V+FDHLHA AF    LG TILGP +NI+T+++  LQ YI  +YTA RMV+  +G              F KL   P  + +     PA FTGS+VRI  DD+P A
Sbjct:   97 LEIEIENMGGHLNAYTSREQTVYYAKLFSQDVAKGVNILGDILQNSTLDPGAIDRERAVILREAEEVDKQVEEVVFDHLHAAAFPENALGYTILGPKENIQTLSQADLQAYIKNNYTADRMVVVGAGNVDHAELCKLAETNFGKL---PQGSGKAKFVRPA-FTGSDVRIRVDDMPTA 270          
BLAST of CX291037 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.913e-37
Identity = 83/177 (46.89%), Postives = 109/177 (61.58%), Query Frame = 3
Query:    6 LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPL 536
            +E EIENMGG LNA+TSRE + YY KVL  +V NA+DIL+DILQNS F+ + I +ERD IL            V+FD LHA AFQ + LGRTILGP +NIK+IT+E +Q +I+ +YT  R+VI+A+GA             F  +     +     A     F GSE+R+ DD+ PL
Sbjct:   97 IETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSENDYIQSKEDEVVFDQLHAAAFQGSALGRTILGPVENIKSITREQIQEFINENYTGDRLVISAAGAVNHEQLVEQVKEKFANVKMSQVSKDVKRAAITNDFIGSELRVRDDEQPL 273          
The following BLAST results are available for this feature:
BLAST of CX291037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
MPPB_ARATH1.993e-6873.18Probable mitochondrial-processing peptidase subuni... [more]
MPPB_BOVIN2.219e-4352.51Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR2.898e-4350.84Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB3.785e-4352.51Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN3.785e-4352.51Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT1.878e-4252.49Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE4.184e-4251.96Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED2.712e-4150.56Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BLAEM6.253e-3851.12Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI6.913e-3746.89Mitochondrial-processing peptidase subunit beta OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03003C03SK OF2 Citrus clementina cDNA clone C03003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291037 ID=CX291037; Name=CX291037; organism=Citrus clementina; type=EST; length=544bp
GAGATTTGGAGGAGGAGATCGAGAATATGGGGGGGCATTTGAATGCTTAC
ACTAGCAGGGAACAGACGACCTATTATGCCAAGGTGTTGGATAAGGATGT
GAATAATGCTTTGGATATTTTGGCTGATATTTTGCAGAACTCGACGTTTG
ATCAAGCGAGGATCACCAGGGAACGGGATGTTATTTTGAGAGAAATGGAG
GAGGTTGAGGGGCAAACAGAGGAAGTCATTTTTGATCATTTGCATGCAAC
TGCATTCCAGTACACTCCTTTGGGGAGAACTATTCTCGGTCCTGCTCAGA
ATATCAAGACAATCACAAAAGAACATCTGCAGAACTATATTCACACTCAC
TATACTGCTCCCAGAATGGTGATTGCTGCTTCTGGAGCTGTGAAGCATGA
AGAAGTTGTTGAGCAAGTGAAGAAATTGTTCACAAAATTATCAGCGGATC
CAACCACCGCTTCTCAATTAGTTGCAAATGAACCAGCAATTTTCACTGGT
TCTGAGGTTAGAATAATTGATGACGATATTCCTTTGGCACAATT
back to top