CX293819

Overview
NameCX293819
Unique NameCX293819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12843 contig Ccv1_Contig12843:372..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.651e-56
Identity = 108/161 (67.08%), Postives = 124/161 (77.02%), Query Frame = 2
Query:    2 TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG------GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIAKTKVERKVIDVQI 466
            T VERRP R ALD+SPFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL             LVIKGEH+ EE G      G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISI KT+VE+KVIDVQI
Sbjct:   74 TAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.101e-54
Identity = 105/162 (64.81%), Postives = 127/162 (78.40%), Query Frame = 2
Query:    2 TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIAKTKVERKVIDVQI 466
            T VE++PRRTA+DISPFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL             LVIKG H++E+  G        ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+I KTKVERKVIDVQ+
Sbjct:   21 TAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.101e-54
Identity = 108/158 (68.35%), Postives = 122/158 (77.22%), Query Frame = 2
Query:    8 VERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIAKTKVERKVIDVQI 466
            VERRPRR ALD+SPFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL             LVIKGEH+ EE+G     G ++SSYDTRL LPDN +KDKVKAELKNGVL ISI KTKVE+KV DV+I
Sbjct:   84 VERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.191e-51
Identity = 104/161 (64.60%), Postives = 121/161 (75.16%), Query Frame = 2
Query:    2 TQVERRPR-RTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA----GGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIAKTKVERKVIDVQI 466
            + VE+RP+ R  +D+SPFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL             LVIKGE + E++     G S SSY TRLQLPDNCEKDK+KAELKNGVL+I+I KTKVERKVIDVQI
Sbjct:   66 SSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 6.052e-50
Identity = 98/160 (61.25%), Postives = 121/160 (75.62%), Query Frame = 2
Query:    2 TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGG-----ASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIAKTKVERKVIDVQI 466
            T VER+PRR+++DISPFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+             LVIK +HR E  G       S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+I KTK+ER VIDVQI
Sbjct:   74 TAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43
Identity = 89/164 (54.27%), Postives = 105/164 (64.02%), Query Frame = 2
Query:    8 VERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGG-----------ASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIAKTKVERKVIDVQI 466
            V+RRPRR   DISPFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E   G            S SSYD RL LPD C+K +V+AELKNGVL +S+ K + ERKVIDVQ+
Sbjct:   74 VQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.644e-42
Identity = 93/168 (55.36%), Postives = 114/168 (67.86%), Query Frame = 2
Query:    8 VERRPRRT-ALD-ISPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIAKTKVERKVIDVQI 466
            V+RRPRR+ ALD ISPFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE  GA           S SSYD RL LPD C+K KV+AELKNGVL +++ KT+VERKVIDVQ+
Sbjct:   72 VQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 51/136 (37.50%), Postives = 77/136 (56.62%), Query Frame = 2
Query:   56 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSS----YDTRLQLPDNCEK-DKVKAELKNGVLYISIAKTKVERK 448
            + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG    S    + +R+ LPD   K D++KAE+KNGVL + I K K + +
Sbjct:   68 VFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.377e-16
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 2
Query:   56 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSS--YDTRLQLPDNCEK-DKVKAELKNGVLYISIAKTKVERK 448
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE    S     + +R++LP+   K D++KAE+KNGVL + I K K + +
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 46/139 (33.09%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   56 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIAKTKVERKVIDVQIL 469
            + DP   TR++ Q+++ MD+L+E+      R   G G  +R  WD++E+E  ++++ DMPGL             L+IK E   E         Y +R++L  N  K D +KAE+KNGVL +++ K K E K    Q++
Sbjct:   67 VFDPFRATRSVGQLMNLMDQLMENPFMAASR---GSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVM 202          
The following BLAST results are available for this feature:
BLAST of CX293819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS21C_SOLLC5.651e-5667.08Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN3.101e-5464.81Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY3.101e-5468.35Small heat shock protein, chloroplastic OS=Petunia... [more]
HS25P_ARATH4.191e-5164.6025.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA6.052e-5061.25Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS21C_WHEAT4.201e-4354.27Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ4.644e-4255.3626.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH3.031e-1737.5023.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH4.377e-1635.8223.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU2.837e-1533.09Small heat shock protein, chloroplastic OS=Chenopo... [more]

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Properties
Property NameValue
Genbank descriptionC05001A04SK FlavSen1 Citrus clementina cDNA clone C05001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293819 ID=CX293819; Name=CX293819; organism=Citrus clementina; type=EST; length=503bp
AACCCAAGTGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATTTCACCTT
TCGGTTTGATGGATCCCTCGTTTCCAACGAGGACAATGCGGCAGATGCTG
GACACAATGGACCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAGGAG
CCGGGCTGGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAGAGG
AGGAAAATGAGATCAAAATGAGATTTGACATGCCTGGACTCTCTAAGGAG
GATGTCAAAGTGTCGGTGGAAGATGAAGTCCTTGTCATTAAAGGAGAGCA
CAGGGCAGAAGAAGCTGGAGGTGCAAGTTTTAGCTCTTACGATACTCGTC
TCCAGCTTCCTGATAACTGTGAGAAAGATAAGGTCAAGGCAGAGCTCAAG
AATGGTGTTCTTTACATTTCAATTGCTAAGACAAAGGTGGAGCGCAAGGT
CATTGATGTTCAAATTCTGTAATTATAATAATGAGTGCCTAGCGAAATGT
GTA
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