CX293823

Overview
NameCX293823
Unique NameCX293823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14246 contig Ccv1_Contig14246:72..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 1.803e-76
Identity = 143/154 (92.86%), Postives = 149/154 (96.75%), Query Frame = 3
Query:    6 RRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            RR  A+T+YRKKLL HKE+ESRVR+ +ENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPE
Sbjct:   10 RRTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPE 163          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 1.803e-76
Identity = 143/154 (92.86%), Postives = 149/154 (96.75%), Query Frame = 3
Query:    6 RRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            RR  A++EYRKKLLQHKE+ESRVR+ +ENLR AKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPE
Sbjct:   10 RRTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPE 163          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.122e-57
Identity = 105/153 (68.63%), Postives = 129/153 (84.31%), Query Frame = 3
Query:    9 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPE
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPE 157          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.122e-57
Identity = 105/153 (68.63%), Postives = 129/153 (84.31%), Query Frame = 3
Query:    9 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPE
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPE 157          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.122e-57
Identity = 105/153 (68.63%), Postives = 129/153 (84.31%), Query Frame = 3
Query:    9 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPE
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPE 157          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.122e-57
Identity = 105/153 (68.63%), Postives = 129/153 (84.31%), Query Frame = 3
Query:    9 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPE
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPE 157          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 6.898e-52
Identity = 100/153 (65.36%), Postives = 125/153 (81.70%), Query Frame = 3
Query:    9 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            R  A+ +Y+  LLQH+E +S+++ ++   R   K+++KTEDD+KSLQSVGQIIGEVL+ LD+ER IVKASSGPRYVVGCR+ VD+  L  G RV LDMTTLTIMR LPREVDP+VYNM  EDPG++S++ VGGL++QIRELRE IELPL NPE
Sbjct:    4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPE 156          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.177e-51
Identity = 95/153 (62.09%), Postives = 125/153 (81.70%), Query Frame = 3
Query:    9 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            R  A+  YR+KL + ++IE +++ +++      K+F+K+E+D+KSLQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR  ++KE+L  GTRV LDMTTLTIMR LPREVDP+VY M HEDPGN+SYS VGGL++QIRELRE +ELPL+NPE
Sbjct:   22 RTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPE 174          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 181.8 bits (460), Expect = 1.260e-45
Identity = 82/150 (54.67%), Postives = 119/150 (79.33%), Query Frame = 3
Query:   18 AMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            A+ ++++KLL+H+  + +++  ++N+R  +K ++KTE+D+K+LQS+GQ+IGEV++ L  E+ IVKASSGPRY+VG R+ VD+ KL  G RV LD+TTLTIMR LPRE DP+VYNM   + G +++  +GGL++QIRELRE IELPL NPE
Sbjct:   56 ALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPE 205          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 8.167e-45
Identity = 87/155 (56.13%), Postives = 114/155 (73.55%), Query Frame = 3
Query:    6 RRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKL-TSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            ++  A+  YR +L++HK  E R+    E ++  KK+F KTED +K++Q +G+IIGEVLR LD ER IVKA +GPRYVV C +  DK  L   G RV LD+TTLTI++ LPREVDP+++NM  E PG+VSY  +GGLS+QIRELRE +ELPLM PE
Sbjct:    7 KKEQALQNYRDRLIEHKNAELRLNKAHELIKKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPE 161          
The following BLAST results are available for this feature:
BLAST of CX293823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PS10B_ARATH1.803e-7692.8626S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH1.803e-7692.8626S protease regulatory subunit 10B homolog A OS=A... [more]
PRS10_SPETR7.122e-5768.6326S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE7.122e-5768.6326S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN7.122e-5768.6326S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN7.122e-5768.6326S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS10_SCHPO6.898e-5265.36Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_CAEEL1.177e-5162.09Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_YEAST1.260e-4554.6726S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PRS10_DICDI8.167e-4556.1326S protease regulatory subunit S10B OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionC05001B03SK FlavSen1 Citrus clementina cDNA clone C05001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293823 ID=CX293823; Name=CX293823; organism=Citrus clementina; type=EST; length=469bp
CCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAG
CACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGC
TGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAA
GTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGC
TTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAG
CAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATA
TGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTT
GTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGT
GGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTAC
CTTTGATGAATCCTGAGCT
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