CX293830

Overview
NameCX293830
Unique NameCX293830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14581 contig Ccv1_Contig14581:79..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.618e-61
Identity = 108/139 (77.70%), Postives = 123/139 (88.49%), Query Frame = 3
Query:    9 ISPSLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            ++P+LSDLCNP+DKKVLL+ KK+  +PYVLASW   TDCCDWYCVTCD TTNRINSLTIFAG + GQIP  VGDLPYLETL FHK P+LTGPIQPAIAKLK LK+LR+SWTN+SG VPDF+SQL NLTFL+LSFNNL+G
Sbjct:   19 LNPALSDLCNPDDKKVLLQIKKAFGDPYVLASWKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNLTFLDLSFNNLTG 157          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 6.361e-58
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 3
Query:   15 PSLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            PSLS+ CNP DKKVLL+ KK+L+NPY+LASWNP TDCC WYCV CDLTT+RINSLTIF+G L GQIP  VGDLP+LETL+F KL +LTG I PAIAKLK+LK +R+SWTN+SGPVP F S+L NLT+L+LSFNNLSG
Sbjct:   24 PSLSERCNPKDKKVLLQIKKALDNPYILASWNPNTDCCGWYCVECDLTTHRINSLTIFSGQLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSG 160          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.241e-53
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 3
Query:    6 CISPSLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCDWYCVTC-DLTTN-RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            C+S    DLCN NDK  LLK KKSLNNPY LASW+P+TDCC WYC+ C D T N R+ +LTIF+G + GQIP EVGDLPYLETL+F KL +LTG IQP IAKLKNL+ LR+SWTN++GP+PDFISQL NL FLELSFN+LSG
Sbjct:   19 CLS---KDLCNQNDKNTLLKIKKSLNNPYHLASWDPQTDCCSWYCLECGDATVNHRVTALTIFSGQISGQIPAEVGDLPYLETLVFRKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSG 157          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 4.133e-49
Identity = 94/144 (65.28%), Postives = 116/144 (80.56%), Query Frame = 3
Query:    3 LCISPSLS-DLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCDWYCVTC-DLTTN-RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            L ++ SL+ DLC+ +DK  LLK KKSLNNPY LASW+PKTDCC WYC+ C D T N R+ SL I  G++ GQIPPEVGDLPYL +L+F KL +LTG IQP IAKLKNL  LR+SWTN++GPVP+F+SQL NL +++LSFN+LSG
Sbjct:   14 LLLTTSLAKDLCHKDDKTTLLKIKKSLNNPYHLASWDPKTDCCSWYCLECGDATVNHRVTSLIIQDGEISGQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNLEYIDLSFNDLSG 157          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PGIP3_PHAVU (Polygalacturonase inhibitor 3 OS=Phaseolus vulgaris GN=PGIP3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.297e-30
Identity = 69/142 (48.59%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   18 SLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCD--WYCVTCDLTTN--RINSLTIFAGDLPGQ--IPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +LS+LCNP DK+ LL+ KK L NP  L+SW P TDCC+  W  V CD  T   R+N+L +   +LP    IP  + +LPYL  L    + +L GPI PAIAKL  L  L I+ TN+SG +PDF+SQ+  L  L+ S+N LSG
Sbjct:   27 ALSELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGHNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 168          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PGIP1_PHAVU (Polygalacturonase inhibitor 1 OS=Phaseolus vulgaris GN=PGIP1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.297e-30
Identity = 69/142 (48.59%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   18 SLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCD--WYCVTCDLTTN--RINSLTIFAGDLPGQ--IPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +LS+LCNP DK+ LL+ KK L NP  L+SW P TDCC+  W  V CD  T   R+N+L +   +LP    IP  + +LPYL  L    + +L GPI PAIAKL  L  L I+ TN+SG +PDF+SQ+  L  L+ S+N LSG
Sbjct:   27 ALSELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGHNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 168          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PGIP2_PHAVU (Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris GN=PGIP2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.250e-29
Identity = 69/145 (47.59%), Postives = 91/145 (62.76%), Query Frame = 3
Query:    9 ISPSLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCD--WYCVTCDLTTN--RINSLTIFAGDLPGQ--IPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +S + S+LCNP DK+ LL+ KK L NP  L+SW P TDCC+  W  V CD  T   R+N+L +   +LP    IP  + +LPYL  L    + +L GPI PAIAKL  L  L I+ TN+SG +PDF+SQ+  L  L+ S+N LSG
Sbjct:   24 LSTAHSELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 168          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.848e-24
Identity = 57/140 (40.71%), Postives = 89/140 (63.57%), Query Frame = 3
Query:   12 SPSLSDLCNPNDKKVLLKFKKSLNNPYVLASWN-PKTDCCDWYCVTCDLTTNRINSLTI-FAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +P+ +  C P+DK+ L++ K+SL NP  L++W+    DCC+W  V CD    R+N++ I  A D+ GQIP  V  L  L +L   +LP L+GPI   +  L NL+ L IS TN+SG +PD ++++ +L  ++LS N+L+G
Sbjct:   20 APARAVRCPPSDKQALMRVKQSLGNPATLSTWSLASADCCEWDHVRCD-EAGRVNNVFIDGANDVRGQIPSAVAGLTALMSLSLFRLPGLSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTG 158          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.872e-17
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   57 LLKFKKSLNNPYVLASWNPKTDC--CDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            L+ FK+SL NP +L+SWN  +    CDW  VTC L   R+NSL++ +  L GQIP E+  L  L  L        +G I P I  LK+L+TL +S  +++G +P  +S+L  L +L+LS N+ SG
Sbjct:   30 LISFKRSLENPSLLSSWNVSSSASHCDWVGVTCLL--GRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAG-NQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSG 151          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.531e-16
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   33 CNPNDKKVLLKFKKSLNNPY--VLASWNPKTDCC-DWYCVTCDLTTNRINSLTI-------------FAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            C+P D+  L  FK SL+ P   +  +W+  TDCC +WY ++CD  + R+  +++              +G + G I P V DL  L +L+      +TG I P I  L +L+ L ++   I+G +P  I +L+ L  L L+ N +SG
Sbjct:   27 CSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSG 173          
The following BLAST results are available for this feature:
BLAST of CX293830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PGIP_PYRCO1.618e-6177.70Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
PGIP_VITVI6.361e-5874.45Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
PGIP1_ARATH1.241e-5370.42Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
PGIP2_ARATH4.133e-4965.28Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
PGIP3_PHAVU4.297e-3048.59Polygalacturonase inhibitor 3 OS=Phaseolus vulgari... [more]
PGIP1_PHAVU4.297e-3048.59Polygalacturonase inhibitor 1 OS=Phaseolus vulgari... [more]
PGIP2_PHAVU1.250e-2947.59Polygalacturonase inhibitor 2 OS=Phaseolus vulgari... [more]
PGIP1_ORYSJ7.848e-2440.71Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]
EXS_ARATH1.872e-1741.60Leucine-rich repeat receptor protein kinase EXS OS... [more]
DR100_ARATH3.531e-1631.97DNA-damage-repair/toleration protein DRT100 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05001C01SK FlavSen1 Citrus clementina cDNA clone C05001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293830 ID=CX293830; Name=CX293830; organism=Citrus clementina; type=EST; length=425bp
GCCTTTGCATTTCCCCTTCACTCTCAGACCTCTGCAACCCAAATGACAAG
AAAGTGCTTCTCAAATTCAAAAAATCTTTGAACAACCCTTACGTTCTAGC
TTCTTGGAACCCAAAAACTGACTGCTGTGACTGGTACTGCGTCACATGCG
ATCTCACCACTAACCGCATCAACTCTCTCACCATCTTCGCCGGAGATCTC
CCCGGCCAGATCCCCCCCGAAGTTGGTGATCTTCCTTACCTCGAAACCCT
AATGTTTCACAAGCTACCCAGCCTCACTGGCCCCATACAACCCGCCATTG
CCAAGCTCAAAAACCTGAAGACGCTACGTATTAGCTGGACAAACATTTCT
GGGCCGGTTCCTGATTTTATCAGCCAACTCACCAACTTAACATTCTTGGA
GCTTTCATTTAACAATCTTTCTGGG
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