CX293831

Overview
NameCX293831
Unique NameCX293831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:115..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.987e-35
Identity = 86/140 (61.43%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   34 SMVSTNCAQFSGLRRS--------SPTQSFSQHVNXXXXXXXXXXXXXXXXVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            S VST   QFSGLRRS        S   SF Q+V+                VVAMA S KFFVGGNWKCNGTKESITKLVSDLN A LE          FVYIDQVK+SLT R+EI+AQN W+GKGGAFTGEISVEQLKD
Sbjct:   17 SAVST---QFSGLRRSFLKLENSVSTQSSFFQNVDSHLRLSSSSRRCPRG-VVAMAGSGKFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPPFVYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKD 152          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.362e-34
Identity = 84/145 (57.93%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   28 MASMVSTNCAQFSGLRRSSPT---------QSFSQHVNXXXXXXXXXXXXXXXX--VVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            MA+   T    FSGLRR SP          QSF   VN                  VVAMA S KFFVGGNWKCNGTK+SI KL+SDLN A LE          FVYIDQVK+SLTDRI+I+ QNSWVGKGGAFTGEISVEQLKD
Sbjct:    1 MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKD 145          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.356e-33
Identity = 74/123 (60.16%), Postives = 82/123 (66.67%), Query Frame = 1
Query:   61 FSGLRRSSPTQSFSQHVNXXXXXXXXXXXXXXXXVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            +SGLRRS P    S                    VVAMA + KFFVGGNWKCNGTK+ I+KLVSDLN AKLE          F+Y+DQVK+SLTDRIEI+ QNSWV KGGAFTGEISVEQLKD
Sbjct:   22 YSGLRRSCPKLDQSHSSLFQHLSLSSSSRKASRAVVAMAGTGKFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKD 144          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 65/89 (73.03%), Postives = 73/89 (82.02%), Query Frame = 1
Query:  163 VVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            +VAMA S KFFVGGNWKCNGTKESI+KLVSDLN A LE          F+YIDQVK+SLTDRIE++AQN+W+GKGGAFTGEIS EQL D
Sbjct:   40 LVAMAGSGKFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVD 128          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.281e-16
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 423
            KFFVGGNWKCNGT E + K+V+ LN+A++  E          +V++  VKN L     +AAQN WV KGGAFTGE+S E L
Sbjct:    4 KFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEML 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.185e-16
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  181 SNKFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 423
            + KFFVGGNWKCNGT E + K+V+ LN+A++  +          +V++  VK++L     +AAQN WV KGGAFTGE+S E L
Sbjct:    2 ARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEML 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 423
            KFFVGGNWKCNGT E + K+++ LN  D   +          +V++  VKN L     +AAQN WV KGGAFTGE+S E L
Sbjct:    4 KFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEML 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 6.358e-16
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 423
            KFFVGGNWKCNGT + + K+V  LN+ ++             +V++  VK+ L   I++AAQN WV KGGAFTGE+S E L
Sbjct:    4 KFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEML 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 423
            KFFVGGNWKCNGT + + K+V  LN+ ++             +V++  VK+ L     +AAQN WV KGGAFTGE+S E L
Sbjct:    4 KFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEML 84          
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQL 423
            KFFVGGNWKCNGT+ES++K+V  LN+  +             +V++      L   I++AAQN WV KGGAFTGE+S + L
Sbjct:    4 KFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQML 84          
The following BLAST results are available for this feature:
BLAST of CX293831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPIC_SPIOL7.987e-3561.43Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_ARATH1.362e-3457.93Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN3.356e-3360.16Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_SECCE1.410e-3173.03Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_COPJA1.281e-1651.85Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ARATH2.185e-1648.19Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_PETHY4.868e-1649.38Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ORYSJ6.358e-1648.15Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_MAIZE1.416e-1546.91Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_STELP1.850e-1546.91Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]

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Properties
Property NameValue
Genbank descriptionC05001C03SK FlavSen1 Citrus clementina cDNA clone C05001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293831 ID=CX293831; Name=CX293831; organism=Citrus clementina; type=EST; length=429bp
ATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCTCCACAAA
CTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAGTCTTTTT
CACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAGACCTCGC
CGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCTTTGTTGG
GGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAGCTTGTTT
CGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGTGGTAGCG
CCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAGATAGAAT
TGAGATAGCAGCTCAAAACTCTTGGGTCGGAAAAGGTGGAGCATTTACAG
GAGAAATCAGTGTGGAACAACTGAAAGAT
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