CX293833

Overview
NameCX293833
Unique NameCX293833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 1.661e-48
Identity = 83/123 (67.48%), Postives = 105/123 (85.37%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++F Q+S+RVKSVD HPT+PW+LASLYSGT+CIWNY +QT  KS  VT+ PVR+AKF+AR+ W+V G+DD FIRV++YNTM  +K FEAH DYIR +AVHPT P+VL++SDD LIKLWDWEK
Sbjct:    8 KRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.310e-48
Identity = 82/122 (67.21%), Postives = 104/122 (85.25%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +++F Q+S+RVKSVD HPT+PW+LASLYSGTVCIWNY +QT  KS +VT+ PVR+AKF+ R+ W+V G+DD +IRV++YNTM  VK FEAH DYIR +AVHPT P+VL++SDD LIKLWDWE
Sbjct:    8 KRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.406e-47
Identity = 82/123 (66.67%), Postives = 104/123 (84.55%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++  Q+S+RVKSVD HPT+PW+LASLYSGT+CIWNY +Q   KS +VT+ PVR+AKFVAR+ W+V G+DD +IRV++YNTM  VK FEAH DYIR +AVHPT P+VL++SDD LIKLWDWEK
Sbjct:    8 KRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.090e-47
Identity = 82/123 (66.67%), Postives = 105/123 (85.37%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++  Q+S+RVKSVD HPT+PW+L+SLYSG+VCIWNY +QT  KS +VT+ PVR++KF+AR+ WIV G+DD FIRV++YNTM  VK FEAH DYIR +AVHPT PFVL++SDD LIKLWDW+K
Sbjct:    8 KRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFIARKQWIVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWDK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.342e-47
Identity = 80/123 (65.04%), Postives = 106/123 (86.18%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++F Q+S+RVKSVD HPT+PW+L+SLYSG+VCIW+Y SQT  KS +V++ PVR+AKF++R+ W+V G+DD FIRV++YNTM  VK FEAH DYIR +AVHPT P+VL++SDD LIKLWDW+K
Sbjct:    8 KRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPVRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 4.522e-46
Identity = 79/123 (64.23%), Postives = 103/123 (83.74%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++  Q+S+R KSVD HPT+PW+L+SLYSG+VCIWNY +QT  KS +VT+ PVR++KF+ R+ W+V G+DD FIRV++YNTM  VK FEAH DYIR +AVHPT PFVL++SDD LIKLWDW+K
Sbjct:    8 KRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWDK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.900e-44
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++   +SDRVKSVD HPT+PW+LASLY+G+VC+WN+ +QT  K+ +V D PVR AKFVAR++W+V G+DD  IRVF+YNT+  V  FEAH DYIR +AVHPT PF+LT+SDD LIKLWDW+K
Sbjct:    8 KRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.900e-44
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++   +SDRVKSVD HPT+PW+LASLY+G+VC+WN+ +QT  K+ +V D PVR AKFVAR++W+V G+DD  IRVF+YNT+  V  FEAH DYIR +AVHPT PF+LT+SDD LIKLWDW+K
Sbjct:    8 KRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_MACFA (Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.900e-44
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++   +SDRVKSVD HPT+PW+LASLY+G+VC+WN+ +QT  K+ +V D PVR AKFVAR++W+V G+DD  IRVF+YNT+  V  FEAH DYIR +AVHPT PF+LT+SDD LIKLWDW+K
Sbjct:    8 KRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_HUMAN (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.900e-44
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++   +SDRVKSVD HPT+PW+LASLY+G+VC+WN+ +QT  K+ +V D PVR AKFVAR++W+V G+DD  IRVF+YNT+  V  FEAH DYIR +AVHPT PF+LT+SDD LIKLWDW+K
Sbjct:    8 KRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDK 130          
The following BLAST results are available for this feature:
BLAST of CX293833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COB21_ARATH1.661e-4867.48Coatomer subunit beta'-1 OS=Arabidopsis thaliana G... [more]
COB23_ARATH6.310e-4867.21Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]
COB22_ARATH1.406e-4766.67Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
COB22_ORYSJ4.090e-4766.67Coatomer subunit beta'-2 OS=Oryza sativa subsp. ja... [more]
COB21_ORYSJ5.342e-4765.04Coatomer subunit beta'-1 OS=Oryza sativa subsp. ja... [more]
COB23_ORYSJ4.522e-4664.23Putative coatomer subunit beta'-3 OS=Oryza sativa ... [more]
COPB2_PONAB1.900e-4463.41Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE... [more]
COPB2_MOUSE1.900e-4463.41Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE... [more]
COPB2_MACFA1.900e-4463.41Coatomer subunit beta' OS=Macaca fascicularis GN=C... [more]
COPB2_HUMAN1.900e-4463.41Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC05001C06SK FlavSen1 Citrus clementina cDNA clone C05001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293833 ID=CX293833; Name=CX293833; organism=Citrus clementina; type=EST; length=525bp
TATGATGAATTGTCGCAGCCTCTCGAACTTCAAATTGAGGTACGACTGAA
TATCCTCTTATGCTTGAAGCAACTTCAATTTATTCATTAATTATTTTAAT
GCAACTTTATTTAAATGTTTTTTTTTCCTAACTAGCTTAAAATAATTTCC
TGATTCCAGAAAGAATTCATCCAGAAATCTGATAGGGTAAAATCCGTGGA
TTTTCACCCAACTCAACCATGGGTTCTAGCAAGTTTGTACTCAGGAACTG
TGTGTATCTGGAATTACCATTCTCAGACAACTGAGAAGTCTGTCAAGGTC
ACTGACTCACCAGTGAGGACAGCCAAGTTTGTGGCACGAGAGCACTGGAT
CGTTTGTGGTTCCGATGACAAGTTCATACGTGTCTTCGATTATAACACAA
TGGCAAGTGTCAAGGAATTTGAGGCACATGAAGATTACATAAGGTCTCTG
GCTGTCCATCCTACTTTCCCATTCGTGCTGACGGCATCGGATGACAAGCT
TATAAAGCTGTGGGATTGGGAGAAG
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