CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:1..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.467e-37
Identity = 75/83 (90.36%), Postives = 81/83 (97.59%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV+ATI+RYKKAC+DSSN GSI+EAN Q+YQQEA+
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEAS 111          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.917e-37
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV+ATI+RYKKAC+DSSN GSI EAN Q+YQQEA+
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEAS 111          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.576e-37
Identity = 72/83 (86.75%), Postives = 81/83 (97.59%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS+RGRLYEYANNSV+ATI+RYKKAC+DSSN GS++EAN Q+YQQEA+
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEAS 111          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.512e-37
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYANNSVR TI+RYKKAC+D+ NP S+TEANTQ+YQQEA+
Sbjct:   28 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEAS 110          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.622e-36
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYANNSVR TI+RYKKAC+D+ NP +ITEANTQ+YQQEA+
Sbjct:   28 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEAS 110          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.373e-35
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANNSV+ TI+RYKKAC DS N  S++EAN QFYQQEA+
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEAS 111          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.771e-34
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN GS+ E N Q+YQQE+
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQES 110          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 5.771e-34
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN GS+ E N Q+YQQE+
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQES 110          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.679e-33
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEAT 492
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV++T++RYKKA +D+SN G++ E N Q YQQE++
Sbjct:   13 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESS 95          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.333e-33
Identity = 64/82 (78.05%), Postives = 76/82 (92.68%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            N+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANN++R+TI+RYKKAC+DS+N  ++ E N  +YQQE+
Sbjct:   13 NSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQES 94          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
AG_TOBAC1.467e-3790.36Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY1.917e-3790.36Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_SOLLC5.576e-3786.75Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AGL1_ARATH9.512e-3785.54Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL5_ARATH1.622e-3685.54Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AG_PANGI1.373e-3585.54Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_BRANA5.771e-3482.93Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH5.771e-3482.93Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MADS3_ORYSJ1.679e-3380.72MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AGL11_ARATH8.333e-3378.05Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
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