CX293902

Overview
NameCX293902
Unique NameCX293902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig891 contig Ccv1_Contig891:147..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX293902 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.345e-21
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 2 
Query:   17 EAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMP-ETDKLAEFAKVLAKLRAS 334
            E + AA+ Q +  L  LE AF +CSKGKPFFGG  +GF+D+  G YLGW    +K+I  +L+D  +TP L  W ERF A  A K V+P + DKL EF + L +  AS
Sbjct:  127 EERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEFRQTLLRWSAS 233
[Close]
BLAST of CX293902 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.003e-13
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 2 
Query:   20 AKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQI--GFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVL 316
            A+  A E     L LLE+AF   S G+ FF G     G LD+A GC+L  +R  E++  + L+D   TP L  W++RF A  A K V+P+T+K+ +F + L
Sbjct:  125 ARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQFTRFL 225
The following BLAST results are available for this feature:
BLAST of CX293902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GSTU6_ORYSJ1.345e-2147.66Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX2_MAIZE3.003e-1339.60Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
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Properties
Property NameValue
Genbank descriptionC05002C10SK FlavRip1 Citrus clementina cDNA clone C05002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293902 ID=CX293902; Name=CX293902; organism=Citrus clementina; type=EST; length=531bp
GCACGAGGATGGAGCGGAAGCTAAGGAAGCTGCGATTGAGCAATTGATTG
AAGGCTTGGTTTTGCTGGAGGATGCTTTTGTTAAGTGTAGCAAAGGGAAG
CCTTTCTTTGGTGGAAGCCAAATTGGGTTTCTTGACATTGCATTTGGTTG
CTACTTGGGATGGGTGAGAGTGACAGAGAAAATGATTGAGGTGAAGCTCC
TTGATGAAGTCAAAACTCCTGGACTGTTCAAATGGGCTGAGAGATTCTGT
GCTGATGCCGCTGTCAAAGATGTTATGCCTGAGACTGATAAGCTTGCAGA
GTTTGCTAAGGTTCTTGCCAAACTCAGAGCTTCTGGCAAATGGAATTAAG
AAGCTTAATTCTGTGCTTGGAGGGGCACAAAAAAAAAAGAAAAAAAAAAA
AAGAGTTGTTTCCAGAAATAAATTCGAATAAGAATTAAGTTTTGTTTTTG
GTTTCGTTTGGAACGGTAAAGCCTGTATCATTTGGGTTCTGTTATCGGGC
TAGGCTGCAGCCTCTCTCGTAGACTCATGTA
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