CX294095

Overview
NameCX294095
Unique NameCX294095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXA_BOVIN (Beta-hexosaminidase subunit alpha OS=Bos taurus GN=HEXA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            EPL      EQ+ LVIGGE CMWGE VD++++   +WPRA A AERLW+  +K+         RLAHFRC L +RG+
Sbjct:  438 EPLAFEGSPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWS--NKMVSNLDFAFKRLAHFRCELLRRGV 512          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXA_PONAB (Beta-hexosaminidase subunit alpha OS=Pongo abelii GN=HEXA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.158e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            EPL      EQ+ LVIGGE CMWGE VD +++   +WPRA A AERLW+  +KL  +      RL+HFRC L +RG+
Sbjct:  438 EPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWS--NKLTSDLTFAYERLSHFRCELLRRGV 512          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXA_HUMAN (Beta-hexosaminidase subunit alpha OS=Homo sapiens GN=HEXA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.158e-14
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            EPL      EQ+ LVIGGE CMWGE VD +++   +WPRA A AERLW+  +KL  +      RL+HFRC L +RG+
Sbjct:  438 EPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWS--NKLTSDLTFAYERLSHFRCELLRRGV 512          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXA_MOUSE (Beta-hexosaminidase subunit alpha OS=Mus musculus GN=Hexa PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            EPL      EQ+ LVIGGE CMWGE VD++++   +WPRA A AERLW+    L         RL+HFRC L +RGI
Sbjct:  437 EPLAFHGTPEQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAVAERLWS--SNLTTNIDFAFKRLSHFRCELVRRGI 511          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXB_MOUSE (Beta-hexosaminidase subunit beta OS=Mus musculus GN=Hexb PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.116e-13
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            EPL      +Q++LVIGGE C+WGE VDA+++   +WPRA+A  ERLW+P  K   + +    RLA  RC +  RGI
Sbjct:  446 EPLNFEGSEKQKQLVIGGEACLWGEFVDATNLTPRLWPRASAVGERLWSP--KTVTDLENAYKRLAVHRCRMVSRGI 520          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXA_RAT (Beta-hexosaminidase subunit alpha OS=Rattus norvegicus GN=Hexa PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            EPL       Q+ LVIGGE CMWGE VD++++   +WPRA A AERLW+    L         RL+HFRC L +RGI
Sbjct:  437 EPLAFRGTPAQKALVIGGEACMWGEYVDSTNLVPRLWPRAGAIAERLWS--SNLTTNMDFAFKRLSHFRCELLRRGI 511          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXB_FELCA (Beta-hexosaminidase subunit beta OS=Felis catus GN=HEXB PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            +PL      EQ+KLVIGGE C+WGE VDA+++   +WPRA+A  ERLW+P D           RL   RC + +RGI
Sbjct:  441 DPLHFDGSQEQKKLVIGGEACLWGEFVDATNLTPRLWPRASAVGERLWSPED--ITSVGNAYNRLTVHRCRMVRRGI 515          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXB_RAT (Beta-hexosaminidase subunit beta OS=Rattus norvegicus GN=Hexb PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            EPL      +Q++LVIGGE C+WGE VDA+++   +WPRA+A  ERLW+P  ++    +    RLA  RC +  RGI
Sbjct:  445 EPLNFEGSEKQKQLVIGGEACLWGEYVDATNLIPRLWPRASAVGERLWSP--RIITNLENAYRRLAVHRCRMVSRGI 519          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXB_HUMAN (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.002e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 3
Query:    6 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 236
            EPL      +Q++L IGGE C+WGE VDA+++   +WPRA+A  ERLW+  D   ++      RL   RC + +RGI
Sbjct:  467 EPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKD--VRDMDDAYDRLTRHRCRMVERGI 541          
BLAST of CX294095 vs. ExPASy Swiss-Prot
Match: HEXA_CAEBR (Beta-hexosaminidase A OS=Caenorhabditis briggsae GN=hex-1 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   36 QQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRG 233
            Q+ LV+GG   +WGE VD ++I+  +WPRA+AAAERLW+P +K  K A+    R+   RC L  RG
Sbjct:  462 QKNLVLGGIAAIWGELVDNTNIEARLWPRASAAAERLWSPAEKTQK-AENAWPRMHELRCRLVSRG 526          
The following BLAST results are available for this feature:
BLAST of CX294095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HEXA_BOVIN9.685e-1550.65Beta-hexosaminidase subunit alpha OS=Bos taurus GN... [more]
HEXA_PONAB2.158e-1450.65Beta-hexosaminidase subunit alpha OS=Pongo abelii ... [more]
HEXA_HUMAN2.158e-1450.65Beta-hexosaminidase subunit alpha OS=Homo sapiens ... [more]
HEXA_MOUSE8.199e-1450.65Beta-hexosaminidase subunit alpha OS=Mus musculus ... [more]
HEXB_MOUSE3.116e-1346.75Beta-hexosaminidase subunit beta OS=Mus musculus G... [more]
HEXA_RAT5.314e-1349.35Beta-hexosaminidase subunit alpha OS=Rattus norveg... [more]
HEXB_FELCA6.941e-1346.75Beta-hexosaminidase subunit beta OS=Felis catus GN... [more]
HEXB_RAT1.184e-1245.45Beta-hexosaminidase subunit beta OS=Rattus norvegi... [more]
HEXB_HUMAN1.002e-1142.86Beta-hexosaminidase subunit beta OS=Homo sapiens G... [more]
HEXA_CAEBR4.974e-1148.48Beta-hexosaminidase A OS=Caenorhabditis briggsae G... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05011A07SK AbsAOv1 Citrus clementina cDNA clone C05011A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294095 ID=CX294095; Name=CX294095; organism=Citrus clementina; type=EST; length=485bp
TGAACGAACCACTTACAAACATCACAAAATCCGAGCAGCAGAAATTAGTT
ATAGGTGGTGAAGTATGCATGTGGGGTGAAACAGTTGATGCATCGGATAT
TCAGCAAACCATATGGCCACGAGCTGCAGCAGCTGCAGAGCGGTTATGGA
CCCCATATGACAAGCTGGCAAAGGAGGCAAAGCAAGTTACCGGAAGGCTG
GCACATTTCAGGTGTTTGCTGAATCAAAGAGGAATTGCGGCTGCTCCATT
AGCTGCCGACACTCCATTAACTCAACCAGGCCGCTCTGCTCCCCTAGAGC
CTGGTTCTTGCTATTTGCAATGATAGCTGAATCATATCTGCAAATTTTAA
TGCATAAAAAGGAAACTGATCCAAAACCGCTCCCATCTTTTATGGCCTTC
ACTGATGAAACTGTTAATTTGGGGAGGAAAACAAATATAAAGACAAATTT
GGTCTTACGGAATCTGAAATAGGTCCCATCTTCTG
back to top