CX294099

Overview
NameCX294099
Unique NameCX294099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294099 vs. ExPASy Swiss-Prot
Match: RB3GP_HUMAN (Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens GN=RAB3GAP1 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  216 YQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGC--------SQLLSDMQAFKAANPGCSLEDFVRWHSPPDWTETD 464
            YQ   L +L  GEP+Y P++QE   +TEDL++E  E++ + G+   G         + LLSDM++FKAANPGCSLEDFVRW+SP D+ E +
Sbjct:  621 YQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCSLEDFVRWYSPRDYIEEE 711          
BLAST of CX294099 vs. ExPASy Swiss-Prot
Match: RB3GP_XENLA (Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis GN=rab3gap1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  216 YQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGC--------SQLLSDMQAFKAANPGCSLEDFVRWHSPPDWTETD 464
            +Q  +L++L +GEP+Y P++Q+   +T+DL++E  E++ + G+   G         + LLSDM++FKAANPGC LEDFVRW+SP D+ E +
Sbjct:  620 HQSGNLMLLNSGEPLYIPVTQDPAPMTDDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCCLEDFVRWYSPRDYIEEE 710          
BLAST of CX294099 vs. ExPASy Swiss-Prot
Match: RB3GP_RAT (Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  216 YQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGC--------SQLLSDMQAFKAANPGCSLEDFVRWHSPPDWTETD 464
            +Q   L +L  GEP+Y P++QE   +TEDL++E  E++ + G+   G         + LLSDM++FKAANPGC LEDFVRW+SP D+ E +
Sbjct:  415 HQHGKLTLLRNGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCCLEDFVRWYSPRDYIEEE 505          
BLAST of CX294099 vs. ExPASy Swiss-Prot
Match: RB3GP_MOUSE (Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus GN=Rab3gap1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.549e-16
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  216 YQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGC--------SQLLSDMQAFKAANPGCSLEDFVRWHSPPDWTETD 464
            +Q   L +L  GEP+Y P++QE   +TEDL++E  E++ + G+   G         + LLSDM++FKAANPGC LEDFVRW+SP D+ E +
Sbjct:  621 HQHGKLTLLHNGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCFLEDFVRWYSPRDYIEEE 711          
BLAST of CX294099 vs. ExPASy Swiss-Prot
Match: RB3GP_DANRE (Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio GN=rab3gap1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  237 MLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAGC--------SQLLSDMQAFKAANPGCSLEDFVRWHSPPDWTE 458
            +L T EP+Y PI+QE   +TEDL++E  E++ + G+   G         + LLSDM++FKAANPGC+L DFVRW+SP D+ E
Sbjct:  616 LLNTQEPLYIPITQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCTLLDFVRWYSPRDYVE 697          
BLAST of CX294099 vs. ExPASy Swiss-Prot
Match: RB3GP_DROME (Rab3 GTPase-activating protein catalytic subunit OS=Drosophila melanogaster GN=CG31935 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-13
Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 3
Query:   15 LIQQLQVINCCLSRK-RRHTIATESLESVMRQCSSNVEDSSP--------CMDTMPETPVLYARVCTGELVIRLGAYQPTDLIMLETGEPVYSPISQEGPLLTEDLIKETEELVLRTGSVGAG------CSQLLSDMQAFKAANPGCSLEDFVRWHSPPDWTE-TDQ 467
            L Q+LQ++N C+ R+ +R   +    E ++ + SS  E+           C D           V + +   RL      + ++ E  E +Y P +QE    TED +++  E++L+ G  G+G      C+ LLSDM+AFKAANP   +EDF+RW+SP DW E TD+
Sbjct:  510 LHQKLQMLNVCVERRVQREANSKRKSEGMVGKASSEEEEDEDDDEGEFFDCDDLTAGAGSPTKAVLSLKPEGRLRRLN-NERLLEEPDEYLYIPDTQEPVPKTEDQLQDDAEVMLKLGP-GSGLTTQMMCTSLLSDMEAFKAANPRGIMEDFIRWYSPKDWEEVTDE 674          
The following BLAST results are available for this feature:
BLAST of CX294099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RB3GP_HUMAN8.214e-1848.35Rab3 GTPase-activating protein catalytic subunit O... [more]
RB3GP_XENLA1.186e-1643.96Rab3 GTPase-activating protein catalytic subunit O... [more]
RB3GP_RAT1.186e-1646.15Rab3 GTPase-activating protein catalytic subunit (... [more]
RB3GP_MOUSE1.549e-1646.15Rab3 GTPase-activating protein catalytic subunit O... [more]
RB3GP_DANRE3.816e-1548.78Rab3 GTPase-activating protein catalytic subunit O... [more]
RB3GP_DROME3.571e-1333.53Rab3 GTPase-activating protein catalytic subunit O... [more]
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Properties
Property NameValue
Genbank descriptionC05011A12SK AbsAOv1 Citrus clementina cDNA clone C05011A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294099 ID=CX294099; Name=CX294099; organism=Citrus clementina; type=EST; length=574bp
CTGAACTCCTGTCTCTTATACAACAATTGCAGGTTATCAATTGCTGTCTT
TCAAGGAAAAGGCGCCATACTATTGCTACTGAATCCTTGGAATCTGTTAT
GAGGCAGTGCAGTTCGAATGTTGAGGATTCATCTCCTTGTATGGATACAA
TGCCTGAAACCCCTGTCTTGTACGCTAGAGTTTGCACTGGAGAACTTGTT
ATCCGACTAGGAGCTTACCAGCCAACTGATTTAATAATGTTGGAGACTGG
TGAACCTGTATACTCCCCCATTTCTCAGGAAGGGCCTTTGCTCACAGAAG
ATCTAATCAAAGAAACAGAGGAGTTAGTGCTTCGAACGGGGAGTGTTGGT
GCTGGGTGTTCTCAACTCCTGTCTGACATGCAGGCTTTCAAGGCTGCAAA
TCCTGGTTGTAGTTTAGAAGATTTTGTGAGATGGCATTCGCCGCCTGATT
GGACTGAAACTGATCAGAGTGATGAGGCAAAAGAGTCCTCTGATGGAAGT
GACTCTTCATCAATGAAAGGGCAACTAGTCGTCGAATGCAAAAGAGGTAA
TTTGTGCGTGACTGTGGGAACATC
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