CX294102

Overview
NameCX294102
Unique NameCX294102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294102_ssr94 microsatellite CX294102_ssr94:94..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294102 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.242e-21
Identity = 55/113 (48.67%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 VVSGGLNQISSSVQELLTMVHPSPSQWSNEXXXXXXXXXXXXXXXXXXXQFPHWFKREDRKLLLVNGVQXXXXXXXXGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENV 339
            ++S GL Q++S VQELLT VHP+ +Q                       Q P W K +DRKLL  +GV         GTGNFT + DAVLAA DYSM+R+VIYIKRG YKENV
Sbjct:  156 LISAGLGQVTSLVQELLTQVHPNSNQQGPNG------------------QIPSWVKTKDRKLLQADGVSVDAIVAQDGTGNFTNVTDAVLAAPDYSMRRYVIYIKRGTYKENV 250          
BLAST of CX294102 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.136e-17
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 VVSGGLNQISSSVQELLTMVHPSPSQWSNEXXXXXXXXXXXXXXXXXXXQFPHWFKREDRKLLLVNGVQXXXXXXXX-GTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENV 339
            +V+GGL+++ ++V+ LLTMVH  PS+                       +FP W K  DRKLL  + +          GTGNFT I DAVLAA DYS KR+VI++KRGVY ENV
Sbjct:  147 IVAGGLSKVGTTVRNLLTMVHSPPSK----PKPKPIKAQTMTKAHSGFSKFPSWVKPGDRKLLQTDNITVADAVVAADGTGNFTTISDAVLAAPDYSTKRYVIHVKRGVYVENV 256          
BLAST of CX294102 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    1 VVSGGLNQISSSVQELLTMVHPS--PSQWSN-----EXXXXXXXXXXXXXXXXXXXQFPHWFKREDRKLLLVNGVQXXXXXXXXGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENV 339
            +V+G L+Q+ S ++ELL +V P   P   S      +                   QFP W + +DRKLL  NG          GTGNFTKIMDA+  A DYS  RFVIYIK+G+Y ENV
Sbjct:  135 LVAGSLDQLYSMLRELLPLVQPEQKPKAVSKPGPIAKGPKAPPGRKLRDTDEDESLQFPDWVRPDDRKLLESNGRTYDVSVALDGTGNFTKIMDAIKKAPDYSSTRFVIYIKKGLYLENV 254          
The following BLAST results are available for this feature:
BLAST of CX294102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PME_PRUPE1.242e-2148.67Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME32_ARATH4.136e-1743.86Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME44_ARATH1.738e-1541.67Probable pectinesterase/pectinesterase inhibitor 4... [more]
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Properties
Property NameValue
Genbank descriptionC05011B03SK AbsAOv1 Citrus clementina cDNA clone C05011B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294102 ID=CX294102; Name=CX294102; organism=Citrus clementina; type=EST; length=463bp
GTGGTATCAGGTGGCCTTAACCAAATTTCTTCGTCGGTTCAAGAACTTCT
AACAATGGTGCATCCTTCCCCCAGCCAATGGTCCAACGAGGGTAGCAGCA
GCAGCAGCGGTGGCAAAAGTCGCGGCGGAGGGGGAAAATCAAGCGGCCAA
TTTCCTCATTGGTTTAAGCGTGAAGATCGGAAATTGTTGCTCGTCAATGG
GGTGCAAGCTGATGTTGTGGTAGCAGCAGATGGTACAGGGAACTTTACTA
AGATAATGGATGCCGTGTTGGCAGCAGAGGATTATAGTATGAAAAGATTC
GTGATTTACATCAAGAGGGGTGTGTATAAAGAGAATGTTAAAAAAAAAAA
AAAAAAAAAAAAAAACCCTTTGGGGCCCCCCTGGCCCCTTTTATTTTTAA
TTTGAAAAAATTTTTTGGTGGGGCCCCAATTTCGGCCTCTTTGGCCAATT
TCCCCCTATGGGG
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